SuccessConsole Output

Started by user soergel
Building remotely on i-24df0d4c in workspace /media/ephemeral0/workspace/trees
[trees] $ hg showconfig paths.default
[trees] $ hg pull --rev default
[trees] $ hg update --clean --rev default
0 files updated, 0 files merged, 0 files removed, 0 files unresolved
[trees] $ hg --config extensions.purge= clean --all
[trees] $ hg log --rev . --template {node}
[trees] $ hg log --rev . --template {rev}
[trees] $ hg log --rev f8504395d61e584c18e6ab4275f509bf35b86e9e
[trees] $ hg log --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev default:0 --follow --prune f8504395d61e584c18e6ab4275f509bf35b86e9e
Parsing POMs
[trees] $ java -Xmx1024M -XX:MaxPermSize=256M -cp /media/ephemeral0/maven3-agent.jar:/media/ephemeral0/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.0.4/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /media/ephemeral0/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.0.4 /tmp/slave.jar /media/ephemeral0/maven3-interceptor.jar 46803
<===[JENKINS REMOTING CAPACITY]===>channel started
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
Executing Maven:  -B -f /media/ephemeral0/workspace/trees/pom.xml -DdevelopmentVersion=1.04-SNAPSHOT -DreleaseVersion=1.031 -U -e clean -Dresume=false release:prepare release:perform
[INFO] Error stacktraces are turned on.
[INFO] Scanning for projects...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building trees 1.04-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ trees ---
[INFO] 
[INFO] --- cobertura-maven-plugin:2.5.1:clean (clean) @ trees ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building trees 1.04-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-release-plugin:2.0:prepare (default-cli) @ trees ---
[INFO] Verifying that there are no local modifications...
[INFO] EXECUTING: /bin/sh -c cd /media/ephemeral0/workspace/trees && hg status
[INFO] [release.properties:unknown]
[INFO] Checking dependencies and plugins for snapshots ...
[INFO] Transforming 'trees'...
[INFO] Not generating release POMs
[INFO] Executing goals 'clean verify'...
[INFO] [INFO] Scanning for projects...
[INFO] [INFO]                                                                         
[INFO] [INFO] ------------------------------------------------------------------------
[INFO] [INFO] Building trees 1.031
[INFO] [INFO] ------------------------------------------------------------------------
[INFO] [INFO] 
[INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ trees ---
[INFO] [INFO] 
[INFO] [INFO] --- cobertura-maven-plugin:2.5.1:clean (clean) @ trees ---
[INFO] [INFO] 
[INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ trees ---
[INFO] [debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/trees/src/main/resources
[INFO] [INFO] 
[INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ trees ---
[INFO] [INFO] Compiling 44 source files to /media/ephemeral0/workspace/trees/target/classes
[INFO] [INFO] 
[INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ trees ---
[INFO] [debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/trees/src/test/resources
[INFO] [INFO] 
[INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ trees ---
[INFO] [INFO] Compiling 12 source files to /media/ephemeral0/workspace/trees/target/test-classes
[INFO] [INFO] 
[INFO] [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ trees ---
[INFO] [INFO] Surefire report directory: /media/ephemeral0/workspace/trees/target/surefire-reports
[INFO] 
[INFO] -------------------------------------------------------
[INFO]  T E S T S
[INFO] -------------------------------------------------------
[INFO] Running TestSuite
[INFO] 2013-03-20 19:52:01,340 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: root
[INFO] 2013-03-20 19:52:01,345 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: a
[INFO] 2013-03-20 19:52:01,346 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: aa
[INFO] 2013-03-20 19:52:01,347 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: aaa
[INFO] 2013-03-20 19:52:01,348 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: aaaa
[INFO] 2013-03-20 19:52:01,348 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: ab
[INFO] 2013-03-20 19:52:01,351 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: b
[INFO] 2013-03-20 19:52:01,352 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: ba
[INFO] 2013-03-20 19:52:01,353 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: baa
[INFO] 2013-03-20 19:52:01,354 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bab
[INFO] 2013-03-20 19:52:01,354 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bb
[INFO] 2013-03-20 19:52:01,355 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bba
[INFO] 2013-03-20 19:52:01,356 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bbb
[INFO] 2013-03-20 19:52:01,356 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bbba
[INFO] 2013-03-20 19:52:01,357 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: c
[INFO] 2013-03-20 19:52:01,358 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: ca
[INFO] 2013-03-20 19:52:01,358 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: cb
[INFO] Tests run: 68, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.672 sec
[INFO] 
[INFO] Results :
[INFO] 
[INFO] Tests run: 68, Failures: 0, Errors: 0, Skipped: 0
[INFO] 
[INFO] [INFO] 
[INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ trees ---
[INFO] [INFO] Building jar: /media/ephemeral0/workspace/trees/target/trees-1.031.jar
[INFO] [INFO] 
[INFO] [INFO] --- maven-jar-plugin:2.4:test-jar (default) @ trees ---
[INFO] [INFO] Building jar: /media/ephemeral0/workspace/trees/target/trees-1.031-tests.jar
[INFO] [INFO] 
[INFO] [INFO] --- maven-jar-plugin:2.4:jar (default) @ trees ---
[INFO] [INFO] ------------------------------------------------------------------------
[INFO] [INFO] BUILD SUCCESS
[INFO] [INFO] ------------------------------------------------------------------------
[INFO] [INFO] Total time: 44.433s
[INFO] [INFO] Finished at: Wed Mar 20 19:52:04 UTC 2013
[INFO] [INFO] Final Memory: 10M/26M
[INFO] [INFO] ------------------------------------------------------------------------
[INFO] Checking in modified POMs...
[INFO] EXECUTING: /bin/sh -c cd /media/ephemeral0/workspace/trees && hg commit --message '[maven-release-plugin] prepare release trees-1.031' /media/ephemeral0/workspace/trees/pom.xml
[INFO] EXECUTING: /bin/sh -c cd /media/ephemeral0/workspace/trees && hg push ssh://dev.davidsoergel.com//home/hg/trees
[INFO] Tagging release with the label trees-1.031...
[INFO] EXECUTING: /bin/sh -c cd /media/ephemeral0/workspace/trees && hg tag --message '[maven-release-plugin]  copy for tag trees-1.031' trees-1.031
[INFO] EXECUTING: /bin/sh -c cd /media/ephemeral0/workspace/trees && hg push ssh://dev.davidsoergel.com//home/hg/trees
[INFO] EXECUTING: /bin/sh -c cd /media/ephemeral0/workspace/trees && hg locate
[INFO] Transforming 'trees'...
[INFO] Not removing release POMs
[INFO] Checking in modified POMs...
[INFO] EXECUTING: /bin/sh -c cd /media/ephemeral0/workspace/trees && hg commit --message '[maven-release-plugin] prepare for next development iteration' /media/ephemeral0/workspace/trees/pom.xml
[INFO] EXECUTING: /bin/sh -c cd /media/ephemeral0/workspace/trees && hg push ssh://dev.davidsoergel.com//home/hg/trees
[INFO] Release preparation complete.
[INFO] Checking out the project to perform the release ...
[INFO] Removing /media/ephemeral0/workspace/trees/target/checkout
[INFO] EXECUTING: /bin/sh -c cd /media/ephemeral0/workspace/trees/target && hg clone -r trees-1.031 ssh://dev.davidsoergel.com//home/hg/trees /media/ephemeral0/workspace/trees/target/checkout
[INFO] 
[INFO] --- maven-release-plugin:2.0:perform (default-cli) @ trees ---
[INFO] EXECUTING: /bin/sh -c cd /media/ephemeral0/workspace/trees/target/checkout && hg locate
[INFO] Executing goals 'deploy site-deploy'...
[INFO] [INFO] Scanning for projects...
[INFO] [WARNING] 
[INFO] [WARNING] Some problems were encountered while building the effective model for com.davidsoergel:trees:jar:1.031
[INFO] [WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-javadoc-plugin is missing.
[INFO] [WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-deploy-plugin is missing.
[INFO] [WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-source-plugin is missing.
[INFO] [WARNING] 
[INFO] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[INFO] [WARNING] 
[INFO] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
[INFO] [WARNING] 
[INFO] [INFO]                                                                         
[INFO] [INFO] ------------------------------------------------------------------------
[INFO] [INFO] Building trees 1.031
[INFO] [INFO] ------------------------------------------------------------------------
[INFO] [INFO] 
[INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ trees ---
[INFO] [debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/trees/target/checkout/src/main/resources
[INFO] [INFO] 
[INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ trees ---
[INFO] [INFO] Compiling 44 source files to /media/ephemeral0/workspace/trees/target/checkout/target/classes
[INFO] [INFO] 
[INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ trees ---
[INFO] [debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/trees/target/checkout/src/test/resources
[INFO] [INFO] 
[INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ trees ---
[INFO] [INFO] Compiling 12 source files to /media/ephemeral0/workspace/trees/target/checkout/target/test-classes
[INFO] [INFO] 
[INFO] [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ trees ---
[INFO] [INFO] Surefire report directory: /media/ephemeral0/workspace/trees/target/checkout/target/surefire-reports
[INFO] 
[INFO] -------------------------------------------------------
[INFO]  T E S T S
[INFO] -------------------------------------------------------
[INFO] Running TestSuite
[INFO] 2013-03-20 19:53:38,023 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: root
[INFO] 2013-03-20 19:53:38,042 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: a
[INFO] 2013-03-20 19:53:38,043 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: aa
[INFO] 2013-03-20 19:53:38,044 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: aaa
[INFO] 2013-03-20 19:53:38,044 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: aaaa
[INFO] 2013-03-20 19:53:38,045 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: ab
[INFO] 2013-03-20 19:53:38,046 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: b
[INFO] 2013-03-20 19:53:38,047 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: ba
[INFO] 2013-03-20 19:53:38,047 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: baa
[INFO] 2013-03-20 19:53:38,048 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bab
[INFO] 2013-03-20 19:53:38,055 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bb
[INFO] 2013-03-20 19:53:38,056 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bba
[INFO] 2013-03-20 19:53:38,056 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bbb
[INFO] 2013-03-20 19:53:38,057 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bbba
[INFO] 2013-03-20 19:53:38,058 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: c
[INFO] 2013-03-20 19:53:38,058 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: ca
[INFO] 2013-03-20 19:53:38,062 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: cb
[INFO] Tests run: 68, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.716 sec
[INFO] 
[INFO] Results :
[INFO] 
[INFO] Tests run: 68, Failures: 0, Errors: 0, Skipped: 0
[INFO] 
[INFO] [INFO] 
[INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ trees ---
[INFO] [INFO] Building jar: /media/ephemeral0/workspace/trees/target/checkout/target/trees-1.031.jar
[INFO] [INFO] 
[INFO] [INFO] >>> maven-source-plugin:2.2.1:jar (attach-sources) @ trees >>>
[INFO] [INFO] 
[INFO] [INFO] <<< maven-source-plugin:2.2.1:jar (attach-sources) @ trees <<<
[INFO] [INFO] 
[INFO] [INFO] --- maven-source-plugin:2.2.1:jar (attach-sources) @ trees ---
[INFO] [INFO] Building jar: /media/ephemeral0/workspace/trees/target/checkout/target/trees-1.031-sources.jar
[INFO] [INFO] 
[INFO] [INFO] --- maven-javadoc-plugin:2.9:jar (attach-javadocs) @ trees ---
[INFO] [INFO] 
[INFO] Loading source files for package com.davidsoergel.trees.htpn...
[INFO] Loading source files for package com.davidsoergel.trees...
[INFO] Loading source files for package com.davidsoergel.trees.dhtpn...
[INFO] Constructing Javadoc information...
[INFO] Standard Doclet version 1.6.0_37
[INFO] Building tree for all the packages and classes...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//AbstractExtendedHierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//AbstractHierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//BasicHierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//ExtendedHierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//ExtendedHierarchicalTypedPropertyNodeImpl.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//HierarchicalPropertyNodeException.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//HierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//HierarchicalTypedPropertyNode.PropertyConsumerFlags.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//MapToHierarchicalTypedPropertyNodeAdapter.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//SerializableHierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//AbstractHierarchyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//AbstractRootedPhylogeny.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//AbstractRootedPhylogeny.MutualExclusionResolutionMode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//BasicHierarchicalStringObjectMap.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//BasicPhylogenyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//BasicRootedPhylogeny.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//DepthFirstTreeIterator.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//DepthFirstTreeIteratorImpl.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//HierarchicalStringObjectMap.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//HierarchyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//ImmutableHierarchyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//ImmutableSortedSetHierarchyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//IntegerGeneratingNodeNamer.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//IntegerNodeNamer.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//LengthWeightHierarchyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//ListHierarchyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//NodeNamer.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//NoSuchNodeException.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//PhylogenyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//RequireExistingNodeNamer.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//RootedPhylogeny.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//SerializablePhylogenyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//SerializableRootedPhylogeny.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//SetHierarchyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//StringIntegerNodeNamer.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//StringNodeNamer.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//TaxonMergingPhylogeny.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//TreeException.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//TreePrinter.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//TreeRuntimeException.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/dhtpn//AbstractDoubleHierarchicalTypedProperties.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/dhtpn//AbstractSerializableDoubleHierarchicalTypedProperties.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/dhtpn//DoubleHierarchicalTypedProperties.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/dhtpn//ExtendedDoubleHierarchicalTypedProperties.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/dhtpn//ResultCollector.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/dhtpn//SerializableDoubleHierarchicalTypedProperties.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/overview-frame.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//package-frame.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//package-summary.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//package-tree.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/dhtpn//package-frame.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/dhtpn//package-summary.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/dhtpn//package-tree.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//package-frame.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//package-summary.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//package-tree.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/constant-values.html...
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[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//class-use/SerializableRootedPhylogeny.html...
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[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees//class-use/TaxonMergingPhylogeny.html...
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[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/apidocs/com/davidsoergel/trees/htpn//package-use.html...
[INFO] Building index for all the packages and classes...
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[INFO] 64 warnings
[INFO] [WARNING] Javadoc Warnings
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/htpn/AbstractHierarchicalTypedPropertyNode.java:66: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/htpn/AbstractHierarchicalTypedPropertyNode.java:208: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/htpn/AbstractHierarchicalTypedPropertyNode.java:267: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/htpn/HierarchicalTypedPropertyNode.java:116: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/htpn/AbstractHierarchicalTypedPropertyNode.java:66: warning - Tag @return cannot be used in field documentation.  It can only be used in the following types of documentation: method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:566: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/TaxonMergingPhylogeny.java:137: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:359: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:670: warning - @inheritDoc used but appendToValue(String, NodeNamer<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:98: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:804: warning - @inheritDoc used but getGreatestNodeDepthBelow() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:89: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:107: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:331: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:118: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:670: warning - @inheritDoc used but appendToValue(String, NodeNamer<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:804: warning - @inheritDoc used but getGreatestNodeDepthBelow() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicRootedPhylogeny.java:64: warning - @Author is an unknown tag -- same as a known tag except for case.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicRootedPhylogeny.java:64: warning - @Version is an unknown tag -- same as a known tag except for case.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/RootedPhylogeny.java:142: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/HierarchyNode.java:50: warning - @See is an unknown tag -- same as a known tag except for case.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:48: warning - @JavadocOK is an unknown tag.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/NodeNamer.java:44: warning - @JavadocOK is an unknown tag.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:50: warning - @JavadocOK is an unknown tag.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/RootedPhylogeny.java:55: warning - @JavadocOK is an unknown tag.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/TaxonMergingPhylogeny.java:49: warning - @JavadocOK is an unknown tag.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:670: warning - @inheritDoc used but appendToValue(String, NodeNamer<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:670: warning - @inheritDoc used but appendToValue(String, NodeNamer<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:670: warning - @inheritDoc used but appendToValue(String, NodeNamer<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:804: warning - @inheritDoc used but getGreatestNodeDepthBelow() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [INFO] Building jar: /media/ephemeral0/workspace/trees/target/checkout/target/trees-1.031-javadoc.jar
[INFO] [INFO] 
[INFO] [INFO] --- maven-jar-plugin:2.4:test-jar (default) @ trees ---
[INFO] [INFO] Building jar: /media/ephemeral0/workspace/trees/target/checkout/target/trees-1.031-tests.jar
[INFO] [INFO] 
[INFO] [INFO] --- maven-jar-plugin:2.4:jar (default) @ trees ---
[INFO] [INFO] 
[INFO] [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ trees ---
[INFO] [INFO] Installing /media/ephemeral0/workspace/trees/target/checkout/target/trees-1.031.jar to /home/ec2-user/.m2/repository/com/davidsoergel/trees/1.031/trees-1.031.jar
[INFO] [INFO] Installing /media/ephemeral0/workspace/trees/target/checkout/pom.xml to /home/ec2-user/.m2/repository/com/davidsoergel/trees/1.031/trees-1.031.pom
[INFO] [INFO] Installing /media/ephemeral0/workspace/trees/target/checkout/target/trees-1.031-sources.jar to /home/ec2-user/.m2/repository/com/davidsoergel/trees/1.031/trees-1.031-sources.jar
[INFO] [INFO] Installing /media/ephemeral0/workspace/trees/target/checkout/target/trees-1.031-javadoc.jar to /home/ec2-user/.m2/repository/com/davidsoergel/trees/1.031/trees-1.031-javadoc.jar
[INFO] [INFO] Installing /media/ephemeral0/workspace/trees/target/checkout/target/trees-1.031-tests.jar to /home/ec2-user/.m2/repository/com/davidsoergel/trees/1.031/trees-1.031-tests.jar
[INFO] [INFO] 
[INFO] [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ trees ---
[INFO] WAGON_VERSION: 1.0-beta-2
[INFO] Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/1.031/trees-1.031.jar
[INFO] Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/1.031/trees-1.031.jar (83 KB at 14.8 KB/sec)
[INFO] Uploading: http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/1.031/trees-1.031.pom
[INFO] Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/1.031/trees-1.031.pom (5 KB at 6.1 KB/sec)
[INFO] Downloading: http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/maven-metadata.xml
[INFO] Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/maven-metadata.xml (384 B at 0.6 KB/sec)
[INFO] Uploading: http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/maven-metadata.xml
[INFO] Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/maven-metadata.xml (416 B at 0.6 KB/sec)
[INFO] Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/1.031/trees-1.031-sources.jar
[INFO] Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/1.031/trees-1.031-sources.jar (91 KB at 17.2 KB/sec)
[INFO] Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/1.031/trees-1.031-javadoc.jar
[INFO] Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/1.031/trees-1.031-javadoc.jar (361 KB at 101.5 KB/sec)
[INFO] Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/1.031/trees-1.031-tests.jar
[INFO] Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/releases/com/davidsoergel/trees/1.031/trees-1.031-tests.jar (28 KB at 9.6 KB/sec)
[INFO] [INFO] 
[INFO] [INFO] --- maven-site-plugin:3.1:site (default-site) @ trees ---
[INFO] [INFO] configuring report plugin org.apache.maven.plugins:maven-javadoc-plugin:2.8.1
[INFO] [INFO] 
[INFO] [INFO] >>> maven-javadoc-plugin:2.8.1:test-aggregate (report:test-aggregate) @ trees >>>
[INFO] [INFO] 
[INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ trees ---
[INFO] [debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/trees/target/checkout/src/main/resources
[INFO] [INFO] 
[INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ trees ---
[INFO] [INFO] Nothing to compile - all classes are up to date
[INFO] [INFO] 
[INFO] [INFO] <<< maven-javadoc-plugin:2.8.1:test-aggregate (report:test-aggregate) @ trees <<<
[INFO] [INFO] 
[INFO] [INFO] >>> maven-javadoc-plugin:2.8.1:javadoc (report:javadoc) @ trees >>>
[INFO] [INFO] 
[INFO] [INFO] <<< maven-javadoc-plugin:2.8.1:javadoc (report:javadoc) @ trees <<<
[INFO] [INFO] 
[INFO] [INFO] >>> maven-javadoc-plugin:2.8.1:test-javadoc (report:test-javadoc) @ trees >>>
[INFO] [INFO] 
[INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ trees ---
[INFO] [debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/trees/target/checkout/src/main/resources
[INFO] [INFO] 
[INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ trees ---
[INFO] [INFO] Nothing to compile - all classes are up to date
[INFO] [INFO] 
[INFO] [INFO] <<< maven-javadoc-plugin:2.8.1:test-javadoc (report:test-javadoc) @ trees <<<
[INFO] [INFO] 
[INFO] [INFO] >>> maven-javadoc-plugin:2.8.1:aggregate (report:aggregate) @ trees >>>
[INFO] [INFO] 
[INFO] [INFO] <<< maven-javadoc-plugin:2.8.1:aggregate (report:aggregate) @ trees <<<
[INFO] [INFO] configuring report plugin org.apache.maven.plugins:maven-jxr-plugin:2.3
[INFO] [INFO] configuring report plugin org.codehaus.mojo:cobertura-maven-plugin:2.5.1
[INFO] [INFO] 
[INFO] [INFO] >>> cobertura-maven-plugin:2.5.1:cobertura (report:cobertura) @ trees >>>
[INFO] [INFO] 
[INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ trees ---
[INFO] [debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/trees/target/checkout/src/main/resources
[INFO] [INFO] 
[INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ trees ---
[INFO] [INFO] Nothing to compile - all classes are up to date
[INFO] [INFO] 
[INFO] [INFO] --- cobertura-maven-plugin:2.5.1:instrument (report:cobertura) @ trees ---
[INFO] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
[INFO] Instrumenting 47 files to /media/ephemeral0/workspace/trees/target/checkout/target/generated-classes/cobertura
[INFO] Cobertura: Saved information on 47 classes.
[INFO] Instrument time: 4028ms
[INFO] 
[INFO] [INFO] Instrumentation was successful.
[INFO] [INFO] NOT adding cobertura ser file to attached artifacts list.
[INFO] [INFO] 
[INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ trees ---
[INFO] [debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/trees/target/checkout/src/test/resources
[INFO] [INFO] 
[INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ trees ---
[INFO] [INFO] Nothing to compile - all classes are up to date
[INFO] [INFO] 
[INFO] [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ trees ---
[INFO] [INFO] Surefire report directory: /media/ephemeral0/workspace/trees/target/checkout/target/surefire-reports
[INFO] 
[INFO] -------------------------------------------------------
[INFO]  T E S T S
[INFO] -------------------------------------------------------
[INFO] Running TestSuite
[INFO] 2013-03-20 19:55:27,483 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: root
[INFO] 2013-03-20 19:55:27,485 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: a
[INFO] 2013-03-20 19:55:27,486 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: aa
[INFO] 2013-03-20 19:55:27,486 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: aaa
[INFO] 2013-03-20 19:55:27,487 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: aaaa
[INFO] 2013-03-20 19:55:27,488 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: ab
[INFO] 2013-03-20 19:55:27,490 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: b
[INFO] 2013-03-20 19:55:27,490 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: ba
[INFO] 2013-03-20 19:55:27,491 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: baa
[INFO] 2013-03-20 19:55:27,491 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bab
[INFO] 2013-03-20 19:55:27,492 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bb
[INFO] 2013-03-20 19:55:27,493 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bba
[INFO] 2013-03-20 19:55:27,493 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bbb
[INFO] 2013-03-20 19:55:27,495 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: bbba
[INFO] 2013-03-20 19:55:27,496 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: c
[INFO] 2013-03-20 19:55:27,497 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: ca
[INFO] 2013-03-20 19:55:27,497 [main] INFO  com.davidsoergel.trees.BasicPhylogenyNodeTest - Tree iterator provided node: cb
[INFO] Tests run: 68, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.842 sec
[INFO] Flushing results...
[INFO] Flushing results done
[INFO] Cobertura: Loaded information on 47 classes.
[INFO] Cobertura: Saved information on 47 classes.
[INFO] 
[INFO] Results :
[INFO] 
[INFO] Tests run: 68, Failures: 0, Errors: 0, Skipped: 0
[INFO] 
[INFO] [INFO] 
[INFO] [INFO] <<< cobertura-maven-plugin:2.5.1:cobertura (report:cobertura) @ trees <<<
[INFO] [INFO] configuring report plugin org.apache.maven.plugins:maven-surefire-report-plugin:2.12
[INFO] [INFO] 
[INFO] [INFO] >>> maven-surefire-report-plugin:2.12:failsafe-report-only (report:failsafe-report-only) @ trees >>>
[INFO] [INFO] 
[INFO] [INFO] <<< maven-surefire-report-plugin:2.12:failsafe-report-only (report:failsafe-report-only) @ trees <<<
[INFO] [INFO] 
[INFO] [INFO] >>> maven-surefire-report-plugin:2.12:report (report:report) @ trees >>>
[INFO] [INFO] 
[INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ trees ---
[INFO] [debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/trees/target/checkout/src/main/resources
[INFO] [INFO] 
[INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ trees ---
[INFO] [INFO] Nothing to compile - all classes are up to date
[INFO] [INFO] 
[INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ trees ---
[INFO] [debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/trees/target/checkout/src/test/resources
[INFO] [INFO] 
[INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ trees ---
[INFO] [INFO] Nothing to compile - all classes are up to date
[INFO] [INFO] 
[INFO] [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ trees ---
[INFO] [INFO] Skipping execution of surefire because it has already been run for this configuration
[INFO] [INFO] 
[INFO] [INFO] <<< maven-surefire-report-plugin:2.12:report (report:report) @ trees <<<
[INFO] [INFO] 
[INFO] [INFO] >>> maven-surefire-report-plugin:2.12:report-only (report:report-only) @ trees >>>
[INFO] [INFO] 
[INFO] [INFO] <<< maven-surefire-report-plugin:2.12:report-only (report:report-only) @ trees <<<
[INFO] [WARNING] Report plugin org.apache.maven.plugins:maven-project-info-reports-plugin has an empty version.
[INFO] [WARNING] 
[INFO] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[INFO] [WARNING] 
[INFO] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
[INFO] [INFO] configuring report plugin org.apache.maven.plugins:maven-project-info-reports-plugin:2.6
[INFO] [INFO] Parent project loaded from repository: com.davidsoergel:basepom:pom:1.01
[INFO] [WARNING] Unable to find a URL to the parent project. The parent menu will NOT be added.
[INFO] [INFO] Relativizing decoration links with respect to project URL: http://dev.davidsoergel.com/trees
[INFO] [INFO] Rendering site with org.apache.maven.skins:maven-default-skin:jar:1.0 skin.
[INFO] [INFO] Skipped "Test JavaDocs" report, file "testapidocs/index.html" already exists for the English version.
[INFO] [INFO] Skipped "JavaDocs" report, file "apidocs/index.html" already exists for the English version.
[INFO] [INFO] Skipped "Source Xref" report, file "xref/index.html" already exists for the English version.
[INFO] [INFO] Skipped "Test Source Xref" report, file "xref-test/index.html" already exists for the English version.
[INFO] [INFO] Skipped "Surefire Report" report, file "surefire-report.html" already exists for the English version.
[INFO] [INFO] Generating "Test JavaDocs" report    --- maven-javadoc-plugin:2.8.1
[INFO] [INFO] 
[INFO] Loading source files for package com.davidsoergel.trees...
[INFO] Constructing Javadoc information...
[INFO] Standard Doclet version 1.6.0_37
[INFO] Building tree for all the packages and classes...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//AbstractRootedPhylogenyAbstractTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//BasicPhylogenyNodeTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//BasicRootedPhylogenyTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//BasicRootedPhylogenyTest.BasicRootedPhylogenyWithSpecificNodeHandles.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//HierarchyNodeInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//ImmutableHierarchyNodeInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//ImmutableSortedSetHierarchyNodeTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//LengthWeightHierarchyNodeInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//ListHierarchyNodeTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//PhylogenyNodeInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//RootedPhylogenyInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//SetHierarchyNodeTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//TaxonMergingPhylogenyInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//package-frame.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//package-summary.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//package-tree.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/constant-values.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/BasicRootedPhylogenyTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/BasicRootedPhylogenyTest.BasicRootedPhylogenyWithSpecificNodeHandles.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/LengthWeightHierarchyNodeInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/ImmutableSortedSetHierarchyNodeTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/BasicPhylogenyNodeTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/TaxonMergingPhylogenyInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/HierarchyNodeInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/PhylogenyNodeInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/RootedPhylogenyInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/ImmutableHierarchyNodeInterfaceTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/AbstractRootedPhylogenyAbstractTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/SetHierarchyNodeTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//class-use/ListHierarchyNodeTest.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/com/davidsoergel/trees//package-use.html...
[INFO] Building index for all the packages and classes...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/overview-tree.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/index-all.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/deprecated-list.html...
[INFO] Building index for all classes...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/allclasses-frame.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/allclasses-noframe.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/index.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/help-doc.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/testapidocs/stylesheet.css...
[INFO] [INFO] Generating "JavaDocs" report    --- maven-javadoc-plugin:2.8.1
[INFO] [INFO] 
[INFO] Loading source files for package com.davidsoergel.trees.htpn...
[INFO] Loading source files for package com.davidsoergel.trees...
[INFO] Loading source files for package com.davidsoergel.trees.dhtpn...
[INFO] Constructing Javadoc information...
[INFO] Standard Doclet version 1.6.0_37
[INFO] Building tree for all the packages and classes...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//AbstractExtendedHierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//AbstractHierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//BasicHierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//ExtendedHierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//ExtendedHierarchicalTypedPropertyNodeImpl.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//HierarchicalPropertyNodeException.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//HierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//HierarchicalTypedPropertyNode.PropertyConsumerFlags.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//MapToHierarchicalTypedPropertyNodeAdapter.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//SerializableHierarchicalTypedPropertyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//AbstractHierarchyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//AbstractRootedPhylogeny.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//AbstractRootedPhylogeny.MutualExclusionResolutionMode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//BasicHierarchicalStringObjectMap.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//BasicPhylogenyNode.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//BasicRootedPhylogeny.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//DepthFirstTreeIterator.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//DepthFirstTreeIteratorImpl.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//HierarchicalStringObjectMap.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//HierarchyNode.html...
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[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//TreeException.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//TreePrinter.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//TreeRuntimeException.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/dhtpn//AbstractDoubleHierarchicalTypedProperties.html...
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[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//class-use/MapToHierarchicalTypedPropertyNodeAdapter.html...
[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees/htpn//class-use/HierarchicalPropertyNodeException.html...
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[INFO] Generating /media/ephemeral0/workspace/trees/target/checkout/target/site/apidocs/com/davidsoergel/trees//class-use/SerializableRootedPhylogeny.html...
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[INFO] Building index for all the packages and classes...
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[INFO] 64 warnings
[INFO] [WARNING] Javadoc Warnings
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/htpn/AbstractHierarchicalTypedPropertyNode.java:66: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/htpn/AbstractHierarchicalTypedPropertyNode.java:208: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/htpn/AbstractHierarchicalTypedPropertyNode.java:267: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/htpn/HierarchicalTypedPropertyNode.java:116: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/htpn/AbstractHierarchicalTypedPropertyNode.java:66: warning - Tag @return cannot be used in field documentation.  It can only be used in the following types of documentation: method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:566: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/TaxonMergingPhylogeny.java:137: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:359: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:670: warning - @inheritDoc used but appendToValue(String, NodeNamer<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:98: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:804: warning - @inheritDoc used but getGreatestNodeDepthBelow() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:89: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:107: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:331: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:118: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:670: warning - @inheritDoc used but appendToValue(String, NodeNamer<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:804: warning - @inheritDoc used but getGreatestNodeDepthBelow() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicRootedPhylogeny.java:64: warning - @Author is an unknown tag -- same as a known tag except for case.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicRootedPhylogeny.java:64: warning - @Version is an unknown tag -- same as a known tag except for case.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/RootedPhylogeny.java:142: warning - @return tag has no arguments.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/HierarchyNode.java:50: warning - @See is an unknown tag -- same as a known tag except for case.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:48: warning - @JavadocOK is an unknown tag.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/NodeNamer.java:44: warning - @JavadocOK is an unknown tag.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:50: warning - @JavadocOK is an unknown tag.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/RootedPhylogeny.java:55: warning - @JavadocOK is an unknown tag.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/TaxonMergingPhylogeny.java:49: warning - @JavadocOK is an unknown tag.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:670: warning - @inheritDoc used but appendToValue(String, NodeNamer<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:670: warning - @inheritDoc used but appendToValue(String, NodeNamer<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:670: warning - @inheritDoc used but appendToValue(String, NodeNamer<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/PhylogenyNode.java:101: warning - @inheritDoc used but clone() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/AbstractRootedPhylogeny.java:169: warning - @inheritDoc used but commonAncestor(PhylogenyNode<T>, PhylogenyNode<T>) does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/BasicPhylogenyNode.java:804: warning - @inheritDoc used but getGreatestNodeDepthBelow() does not override or implement any method.
[INFO] [WARNING] /media/ephemeral0/workspace/trees/target/checkout/src/main/java/com/davidsoergel/trees/LengthWeightHierarchyNode.java:131: warning - @inheritDoc used but toNewick(Writer, String, String, int, double) does not override or implement any method.
[INFO] [INFO] Generating "Source Xref" report    --- maven-jxr-plugin:2.3
[INFO] [INFO] Generating "Test Source Xref" report    --- maven-jxr-plugin:2.3
[INFO] [INFO] Generating "Cobertura Test Coverage" report    --- cobertura-maven-plugin:2.5.1
[INFO] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
[INFO] Cobertura: Loaded information on 47 classes.
[INFO] Report time: 10795ms
[INFO] 
[INFO] [INFO] Cobertura Report generation was successful.
[INFO] [INFO] Generating "Surefire Report" report    --- maven-surefire-report-plugin:2.12
[INFO] [INFO] Generating "About" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Project Team" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Dependency Information" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Project Plugins" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Continuous Integration" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Issue Tracking" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Source Repository" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Project License" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Plugin Management" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Distribution Management" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Project Summary" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Mailing Lists" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] Generating "Dependencies" report    --- maven-project-info-reports-plugin:2.6
[INFO] [INFO] 
[INFO] [INFO] --- maven-site-plugin:3.1:deploy (default-deploy) @ trees ---
[INFO] [INFO] Parent project loaded from repository: com.davidsoergel:basepom:pom:1.01
[INFO] [INFO] Parent project loaded from repository: com.davidsoergel:basepom:pom:1.01
[INFO] scpexe://dev.davidsoergel.com/home/build/mavensites/trees/ - Session: Opened  
[INFO] [INFO] Pushing /media/ephemeral0/workspace/trees/target/checkout/target/site
[INFO] [INFO]    >>> to scpexe://dev.davidsoergel.com/home/build/mavensites/trees/./
[INFO] Executing command: mkdir -p /home/build/mavensites/trees/./
[INFO] Executing command: /bin/bash -c 'ssh -i /home/ec2-user/.ssh/id_rsa -o "BatchMode yes" jenkins@dev.davidsoergel.com "mkdir -p /home/build/mavensites/trees/./"'
[INFO] 
[INFO] 
[INFO] Executing command: mkdir -p /home/build/mavensites/trees//.
[INFO] 
[INFO] Executing command: /bin/bash -c 'ssh -i /home/ec2-user/.ssh/id_rsa -o "BatchMode yes" jenkins@dev.davidsoergel.com "mkdir -p /home/build/mavensites/trees//.
[INFO] "'
[INFO] 
[INFO] 
[INFO] Uploading: ./wagon272017482293222790.zip to scpexe://dev.davidsoergel.com/home/build/mavensites/trees/
[INFO] 
[INFO] Executing command: /bin/bash -c 'cd /tmp && scp -i /home/ec2-user/.ssh/id_rsa -o "BatchMode yes" wagon272017482293222790.zip jenkins@dev.davidsoergel.com:/home/build/mavensites/trees//./wagon272017482293222790.zip'
[INFO] ###############################################################################################################################################################################################################################################
[INFO] Transfer finished. 976328 bytes copied in 0.964 seconds
[INFO] Executing command: cd /home/build/mavensites/trees/./; unzip -q -o wagon272017482293222790.zip; rm -f wagon272017482293222790.zip
[INFO] Executing command: /bin/bash -c 'ssh -i /home/ec2-user/.ssh/id_rsa -o "BatchMode yes" jenkins@dev.davidsoergel.com "cd /home/build/mavensites/trees/./; unzip -q -o wagon272017482293222790.zip; rm -f wagon272017482293222790.zip"'
[INFO] 
[INFO] 
[INFO] Executing command: chmod -Rf g+w,a+rX /home/build/mavensites/trees/
[INFO] Executing command: /bin/bash -c 'ssh -i /home/ec2-user/.ssh/id_rsa -o "BatchMode yes" jenkins@dev.davidsoergel.com "chmod -Rf g+w,a+rX /home/build/mavensites/trees/"'
[INFO] 
[INFO] 
[INFO] scpexe://dev.davidsoergel.com/home/build/mavensites/trees/ - Session: Disconnecting  
[INFO] scpexe://dev.davidsoergel.com/home/build/mavensites/trees/ - Session: Disconnected
[INFO] [INFO] ------------------------------------------------------------------------
[INFO] [INFO] BUILD SUCCESS
[INFO] [INFO] ------------------------------------------------------------------------
[INFO] [INFO] Total time: 6:23.959s
[INFO] [INFO] Finished at: Wed Mar 20 19:58:49 UTC 2013
[INFO] [INFO] Final Memory: 27M/68M
[INFO] [INFO] ------------------------------------------------------------------------
[INFO] Cleaning up after release...
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 8:17.135s
[INFO] Finished at: Wed Mar 20 19:58:58 UTC 2013
[INFO] Final Memory: 9M/25M
[INFO] ------------------------------------------------------------------------
[JENKINS] Archiving /media/ephemeral0/workspace/trees/pom.xml to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/trees/modules/com.davidsoergel$trees/builds/2013-03-20_15-50-28/archive/com.davidsoergel/trees/1.04-SNAPSHOT/trees-1.04-SNAPSHOT.pom
Waiting for Jenkins to finish collecting data
channel stopped
[M2Release] marking build to keep until the next release build
[M2Release] removing keep build from build 11
Maven RedeployPublisher use remote i-24df0d4c maven settings from : /home/ec2-user/.m2/settings.xml
[ERROR] uniqueVersion == false is not anymore supported in maven 3
[INFO] Deployment in dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots (id=dev.davidsoergel.com.snapshot,uniqueVersion=false)
Deploying the main artifact trees-1.04-SNAPSHOT.pom
Downloading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.04-SNAPSHOT/maven-metadata.xml
Downloaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.04-SNAPSHOT/maven-metadata.xml (2 KB at 24.3 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.04-SNAPSHOT/trees-1.04-20130320.195907-3.pom
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.04-SNAPSHOT/trees-1.04-20130320.195907-3.pom (5 KB at 15.8 KB/sec)
Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/maven-metadata.xml
Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/maven-metadata.xml (380 B at 6.2 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.04-SNAPSHOT/maven-metadata.xml
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.04-SNAPSHOT/maven-metadata.xml (2 KB at 6.1 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/maven-metadata.xml
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/maven-metadata.xml (380 B at 1.5 KB/sec)
[INFO] Deployment done in 1.3 sec
Finished: SUCCESS