SuccessConsole Output

<===[JENKINS REMOTING CAPACITY]===>channel started
Executing Maven:  -B -f /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/pom.xml -U -e clean source:jar package jar:test-jar javadoc:jar
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[INFO] Building phyloutils 0.93-SNAPSHOT
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[INFO] Building jar: /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/phyloutils-0.93-SNAPSHOT-sources.jar
[INFO] 
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[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 7 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ phyloutils ---
[INFO] Compiling 35 source files to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/classes
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/src/main/java/edu/berkeley/compbio/phyloutils/NewickWithSynonymsAndRanksTaxonomyService.java:[17,45] NotImplementedException is internal proprietary API and may be removed in a future release
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[INFO] 
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[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ phyloutils ---
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[INFO] 
[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ phyloutils ---
[INFO] Surefire report directory: /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running TestSuite
2014-07-12 20:39:44,607 [main] INFO  edu.berkeley.compbio.phyloutils.NewickStringTaxonomyService - Cache key: itol090314_name.tree, false
2014-07-12 20:39:44,650 [main] INFO  com.davidsoergel.dsutils.CacheManager - Loading cache: /tmp/edu.berkeley.compbio.phyloutils.CiccarelliTaxonomyService/itol090314_name.tree, false.basePhylogeny
2014-07-12 20:39:44,872 [main] INFO  edu.berkeley.compbio.phyloutils.NewickStringTaxonomyService - Loaded caches for itol090314_name.tree, false
BasicRootedPhylogeny{root}
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.956 sec
[JENKINS] Recording test results
Results :

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0


log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ phyloutils ---
[INFO] Building jar: /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/phyloutils-0.93-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-jar-plugin:2.4:test-jar (default) @ phyloutils ---
[INFO] Building jar: /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/phyloutils-0.93-SNAPSHOT-tests.jar
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default) @ phyloutils ---
[INFO] 
[INFO] --- maven-jar-plugin:2.4:test-jar (default-cli) @ phyloutils ---
[INFO] 
[INFO] --- maven-javadoc-plugin:2.9.1:jar (default-cli) @ phyloutils ---
[INFO] 
Loading source files for package edu.berkeley.compbio.phyloutils...
Loading source files for package edu.berkeley.compbio.phyloutils.alphadiversity...
Loading source files for package edu.berkeley.compbio.phyloutils.betadiversity...
Constructing Javadoc information...
Standard Doclet version 1.7.0_60
Building tree for all the packages and classes...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/CiccarelliTaxonomyService.html...
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Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/ExplicitHybridRootedPhylogeny.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/HugenholtzTaxonomyService.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/HybridRootedPhylogeny.html...
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Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/NASTDistanceMapper.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/NearestNodeFinder.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/NewickIntegerTaxonomyService.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/NewickParser.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/NewickStringTaxonomyService.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/NewickWithSynonymsAndRanksTaxonomyService.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/PhylogenyTypeConverter.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/PhyloUtilsException.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/PhyloUtilsRuntimeException.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/RankedTaxonomyService.html...
Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/workspace/target/apidocs/edu/berkeley/compbio/phyloutils/RequiresPreparationTaxonomyService.html...
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[INFO] Total time: 48.640s
[INFO] Finished at: Sat Jul 12 20:40:05 EDT 2014
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