SuccessConsole Output

Started by upstream project "trees" build number 7
Building remotely on i-3ac56242 in workspace /media/ephemeral0/workspace/phyloutils
[phyloutils] $ hg showconfig paths.default
[phyloutils] $ hg pull --rev default
[phyloutils] $ hg update --clean --rev default
0 files updated, 0 files merged, 0 files removed, 0 files unresolved
[phyloutils] $ hg --config extensions.purge= clean --all
[phyloutils] $ hg log --rev . --template {node}
[phyloutils] $ hg log --rev . --template {rev}
[phyloutils] $ hg log --rev d55deaa8562916b1bccc27debbadf4975e462629
[phyloutils] $ hg log --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev default:0 --follow --prune d55deaa8562916b1bccc27debbadf4975e462629
 your Apache Maven build is setup to use a config with id org.jenkinsci.plugins.configfiles.maven.MavenSettingsConfig1337980147845 but cannot find the config
Parsing POMs
Downloaded artifact http://dev.davidsoergel.com/nexus/content/repositories/snapshots//com/davidsoergel/basepom/0.99-SNAPSHOT/maven-metadata.xml
[phyloutils] $ /usr/java/default/bin/java -Xmx1024M -XX:MaxPermSize=256M -cp /media/ephemeral0/maven3-agent.jar:/media/ephemeral0/tools/Maven/Maven_3.0.4/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /media/ephemeral0/tools/Maven/Maven_3.0.4 /tmp/slave.jar /media/ephemeral0/maven3-interceptor.jar 44097
<===[JENKINS REMOTING CAPACITY]===>channel started
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
Executing Maven:  -B -f /media/ephemeral0/workspace/phyloutils/pom.xml -U -cpu -e clean source:jar package jar:test-jar
[INFO] Error stacktraces are turned on.
[WARNING] Command line option -cpu is deprecated and will be removed in future Maven versions.
[INFO] Scanning for projects...
Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/basepom/0.99-SNAPSHOT/maven-metadata.xml
Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/basepom/0.99-SNAPSHOT/maven-metadata.xml (809 B at 0.7 KB/sec)
Projects to build: [MavenProject: edu.berkeley.compbio:phyloutils:0.92-SNAPSHOT @ /media/ephemeral0/workspace/phyloutils/pom.xml]
Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/codehaus/mojo/maven-metadata.xml
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projectStarted edu.berkeley.compbio:phyloutils:0.92-SNAPSHOT
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building phyloutils 0.92-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/dsutils/1.04-SNAPSHOT/maven-metadata.xml
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Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.023-SNAPSHOT/maven-metadata.xml
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Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.023-SNAPSHOT/trees-1.023-20120706.202634-15.pom
Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.023-SNAPSHOT/trees-1.023-20120706.202634-15.pom (4 KB at 39.0 KB/sec)
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Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.023-SNAPSHOT/trees-1.023-20120706.202634-15.jar
Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.023-SNAPSHOT/trees-1.023-20120706.202634-15-tests.jar
Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.023-SNAPSHOT/trees-1.023-20120706.202634-15-tests.jar (28 KB at 116.4 KB/sec)
Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/trees/1.023-SNAPSHOT/trees-1.023-20120706.202634-15.jar (83 KB at 324.4 KB/sec)
mojoStarted org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean)
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ phyloutils ---
mojoSucceeded org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean)
mojoStarted org.codehaus.mojo:cobertura-maven-plugin:2.5.1(clean)
[INFO] 
[INFO] --- cobertura-maven-plugin:2.5.1:clean (clean) @ phyloutils ---
mojoSucceeded org.codehaus.mojo:cobertura-maven-plugin:2.5.1(clean)
Jul 06, 2012 8:27:30 PM hudson.maven.ExecutedMojo <init>
WARNING: Failed to getClass for org.apache.maven.plugin.source.SourceJarMojo
mojoStarted org.apache.maven.plugins:maven-source-plugin:2.1.2(default-cli)
[INFO] 
[INFO] --- maven-source-plugin:2.1.2:jar (default-cli) @ phyloutils ---
[INFO] Building jar: /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.92-SNAPSHOT-sources.jar
mojoSucceeded org.apache.maven.plugins:maven-source-plugin:2.1.2(default-cli)
mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-resources)
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ phyloutils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 7 resources
mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-resources)
mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compile)
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ phyloutils ---
[INFO] Compiling 35 source files to /media/ephemeral0/workspace/phyloutils/target/classes
[WARNING] /media/ephemeral0/workspace/phyloutils/src/main/java/edu/berkeley/compbio/phyloutils/NewickWithSynonymsAndRanksTaxonomyService.java:[11,45] NotImplementedException is internal proprietary API and may be removed in a future release
[WARNING] /media/ephemeral0/workspace/phyloutils/src/main/java/edu/berkeley/compbio/phyloutils/NewickWithSynonymsAndRanksTaxonomyService.java:[277,12] NotImplementedException is internal proprietary API and may be removed in a future release
mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compile)
mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-testResources)
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ phyloutils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 4 resources
mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-testResources)
mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-testCompile)
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ phyloutils ---
[INFO] Compiling 4 source files to /media/ephemeral0/workspace/phyloutils/target/test-classes
mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-testCompile)
mojoStarted org.apache.maven.plugins:maven-surefire-plugin:2.12(default-test)
[INFO] 
[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ phyloutils ---
[INFO] Surefire report directory: /media/ephemeral0/workspace/phyloutils/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running TestSuite
2012-07-06 20:27:55,039 [main] INFO  edu.berkeley.compbio.phyloutils.NewickStringTaxonomyService - Cache key: itol090314_name.tree, false
2012-07-06 20:27:55,130 [main] INFO  com.davidsoergel.dsutils.CacheManager - Loading cache: /tmp/edu.berkeley.compbio.phyloutils.CiccarelliTaxonomyService/itol090314_name.tree, false.basePhylogeny
2012-07-06 20:27:55,552 [main] INFO  edu.berkeley.compbio.phyloutils.NewickStringTaxonomyService - Loaded caches for itol090314_name.tree, false
BasicRootedPhylogeny{root}
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.553 sec

Results :

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0

mojoSucceeded org.apache.maven.plugins:maven-surefire-plugin:2.12(default-test)
[JENKINS] Recording test results
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default-jar)
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ phyloutils ---
[INFO] Building jar: /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.92-SNAPSHOT.jar
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default-jar)
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default)
[INFO] [INFO] Building jar: /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.92-SNAPSHOT-tests.jar

[INFO] --- maven-jar-plugin:2.4:test-jar (default) @ phyloutils ---
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default)
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default)
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default) @ phyloutils ---
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default)
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default-cli)
[INFO] [WARNING] Artifact edu.berkeley.compbio:phyloutils:test-jar:tests:0.92-SNAPSHOT already attached to project, ignoring duplicate

[INFO] --- maven-jar-plugin:2.4:test-jar (default-cli) @ phyloutils ---
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default-cli)
projectSucceeded edu.berkeley.compbio:phyloutils:0.92-SNAPSHOT
sessionEnded
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 53.968s
[INFO] Finished at: Fri Jul 06 20:28:03 UTC 2012
[INFO] Final Memory: 20M/48M
[INFO] ------------------------------------------------------------------------
Projects to build: [MavenProject: edu.berkeley.compbio:phyloutils:0.92-SNAPSHOT @ /media/ephemeral0/workspace/phyloutils/pom.xml]
[JENKINS] Archiving /media/ephemeral0/workspace/phyloutils/pom.xml to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/modules/edu.berkeley.compbio$phyloutils/builds/2012-07-06_16-26-52/archive/edu.berkeley.compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-SNAPSHOT.pom
[JENKINS] Archiving /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.92-SNAPSHOT.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/modules/edu.berkeley.compbio$phyloutils/builds/2012-07-06_16-26-52/archive/edu.berkeley.compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-SNAPSHOT.jar
[JENKINS] Archiving /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.92-SNAPSHOT-sources.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/modules/edu.berkeley.compbio$phyloutils/builds/2012-07-06_16-26-52/archive/edu.berkeley.compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-SNAPSHOT-sources.jar
[JENKINS] Archiving /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.92-SNAPSHOT-tests.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/modules/edu.berkeley.compbio$phyloutils/builds/2012-07-06_16-26-52/archive/edu.berkeley.compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-SNAPSHOT-tests.jar
Waiting for Jenkins to finish collecting data
channel stopped
 your Apache Maven build is setup to use a config with id org.jenkinsci.plugins.configfiles.maven.MavenSettingsConfig1337980147845 but cannot find the config
Maven RedeployPublished use remote i-3ac56242 maven settings from : /home/ec2-user/.m2/settings.xml
[ERROR] uniqueVersion == false is not anymore supported in maven 3
[INFO] Deployment in dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots (id=dev.davidsoergel.com.snapshot,uniqueVersion=false)
Deploying the main artifact phyloutils-0.92-SNAPSHOT.jar
Downloading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/maven-metadata.xml
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Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-20120706.202817-10.jar
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-20120706.202817-10.jar (2793 KB at 4335.7 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-20120706.202817-10.pom
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-20120706.202817-10.pom (7 KB at 35.6 KB/sec)
Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/maven-metadata.xml
Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/maven-metadata.xml (289 B at 11.8 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/maven-metadata.xml
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Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/maven-metadata.xml
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/maven-metadata.xml (289 B at 2.2 KB/sec)
Deploying the main artifact phyloutils-0.92-SNAPSHOT-sources.jar
Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-20120706.202817-10-sources.jar
Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-20120706.202817-10-sources.jar (2779 KB at 5395.0 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/maven-metadata.xml
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Deploying the main artifact phyloutils-0.92-SNAPSHOT-tests.jar
Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-20120706.202817-10-tests.jar
Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/phyloutils-0.92-20120706.202817-10-tests.jar (11 KB at 58.9 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.92-SNAPSHOT/maven-metadata.xml
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[INFO] Deployment done in 2.4 sec
Triggering a new build of ncbitaxonomy #9
Finished: SUCCESS