Started by an SCM change Building remotely on i-d20da2aa in workspace /media/ephemeral0/workspace/phyloutils [phyloutils] $ hg showconfig paths.default [phyloutils] $ hg pull --rev default [phyloutils] $ hg update --clean --rev default 0 files updated, 0 files merged, 0 files removed, 0 files unresolved [phyloutils] $ hg --config extensions.purge= clean --all [phyloutils] $ hg log --rev . --template {node} [phyloutils] $ hg log --rev . --template {rev} [phyloutils] $ hg log --rev efc70db540bc531f82306cc6620ff1ffbd19fdd2 [phyloutils] $ hg log --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev default:0 --follow --prune efc70db540bc531f82306cc6620ff1ffbd19fdd2 your Apache Maven build is setup to use a config with id org.jenkinsci.plugins.configfiles.maven.MavenSettingsConfig1337980147845 but cannot find the config Parsing POMs [phyloutils] $ /usr/java/default/bin/java -Xmx1024M -XX:MaxPermSize=256M -cp /media/ephemeral0/maven3-agent.jar:/media/ephemeral0/tools/Maven/Maven_3.0.4/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /media/ephemeral0/tools/Maven/Maven_3.0.4 /tmp/slave.jar /media/ephemeral0/maven3-interceptor.jar 54490 <===[JENKINS REMOTING CAPACITY]===>channel started log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter). log4j:WARN Please initialize the log4j system properly. Executing Maven: -B -f /media/ephemeral0/workspace/phyloutils/pom.xml -U -e clean source:jar package jar:test-jar [INFO] Error stacktraces are turned on. [INFO] Scanning for projects... Projects to build: [MavenProject: edu.berkeley.compbio:phyloutils:0.93-SNAPSHOT @ /media/ephemeral0/workspace/phyloutils/pom.xml] Downloading: http://repo.maven.apache.org/maven2/org/codehaus/mojo/maven-metadata.xml Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/codehaus/mojo/maven-metadata.xml Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-metadata.xml Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-metadata.xml Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-metadata.xml (11 KB at 15.7 KB/sec) Downloaded: http://repo.maven.apache.org/maven2/org/codehaus/mojo/maven-metadata.xml (21 KB at 20.7 KB/sec) Downloaded: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-metadata.xml (11 KB at 3.0 KB/sec) Downloaded: http://dev.davidsoergel.com/nexus/content/groups/public/org/codehaus/mojo/maven-metadata.xml (21 KB at 5.8 KB/sec) Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml (632 B at 34.3 KB/sec) Downloaded: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml (632 B at 3.0 KB/sec) projectStarted edu.berkeley.compbio:phyloutils:0.93-SNAPSHOT [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building phyloutils 0.93-SNAPSHOT [INFO] ------------------------------------------------------------------------ mojoStarted org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean) [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ phyloutils --- [INFO] Deleting /media/ephemeral0/workspace/phyloutils/target mojoSucceeded org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean) mojoStarted org.codehaus.mojo:cobertura-maven-plugin:2.5.1(clean) [INFO] [INFO] --- cobertura-maven-plugin:2.5.1:clean (clean) @ phyloutils --- mojoSucceeded org.codehaus.mojo:cobertura-maven-plugin:2.5.1(clean) Jul 08, 2012 12:55:03 AM hudson.maven.ExecutedMojo <init> WARNING: Failed to getClass for org.apache.maven.plugin.source.SourceJarMojo mojoStarted org.apache.maven.plugins:maven-source-plugin:2.1.2(default-cli) [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (default-cli) @ phyloutils --- [INFO] Building jar: /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.93-SNAPSHOT-sources.jar mojoSucceeded org.apache.maven.plugins:maven-source-plugin:2.1.2(default-cli) mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-resources) [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ phyloutils --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 7 resources mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-resources) mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compile) [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ phyloutils --- [INFO] Compiling 35 source files to /media/ephemeral0/workspace/phyloutils/target/classes [WARNING] /media/ephemeral0/workspace/phyloutils/src/main/java/edu/berkeley/compbio/phyloutils/NewickWithSynonymsAndRanksTaxonomyService.java:[11,45] NotImplementedException is internal proprietary API and may be removed in a future release [WARNING] /media/ephemeral0/workspace/phyloutils/src/main/java/edu/berkeley/compbio/phyloutils/NewickWithSynonymsAndRanksTaxonomyService.java:[277,12] NotImplementedException is internal proprietary API and may be removed in a future release mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compile) mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-testResources)[debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ phyloutils --- mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-testResources) [INFO] Compiling 4 source files to /media/ephemeral0/workspace/phyloutils/target/test-classes mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-testCompile) [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ phyloutils --- mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-testCompile) mojoStarted org.apache.maven.plugins:maven-surefire-plugin:2.12(default-test) [INFO] [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ phyloutils --- [INFO] Surefire report directory: /media/ephemeral0/workspace/phyloutils/target/surefire-reports ------------------------------------------------------- T E S T S ------------------------------------------------------- Running TestSuite 2012-07-08 00:55:40,130 [main] INFO edu.berkeley.compbio.phyloutils.NewickStringTaxonomyService - Cache key: itol090314_name.tree, false 2012-07-08 00:55:40,307 [main] INFO com.davidsoergel.dsutils.CacheManager - Loading cache: /tmp/edu.berkeley.compbio.phyloutils.CiccarelliTaxonomyService/itol090314_name.tree, false.basePhylogeny 2012-07-08 00:55:41,110 [main] INFO edu.berkeley.compbio.phyloutils.NewickStringTaxonomyService - Loaded caches for itol090314_name.tree, false BasicRootedPhylogeny{root} Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.248 sec Results : Tests run: 6, Failures: 0, Errors: 0, Skipped: 0 mojoSucceeded org.apache.maven.plugins:maven-surefire-plugin:2.12(default-test) [JENKINS] Recording test results mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default-jar) [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ phyloutils --- [INFO] Building jar: /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.93-SNAPSHOT.jar mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default-jar) mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default) [INFO] Building jar: /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.93-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-jar-plugin:2.4:test-jar (default) @ phyloutils --- mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default) mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default) [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default) @ phyloutils --- mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default) mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default-cli) [INFO] [WARNING] Artifact edu.berkeley.compbio:phyloutils:test-jar:tests:0.93-SNAPSHOT already attached to project, ignoring duplicate [INFO] --- maven-jar-plugin:2.4:test-jar (default-cli) @ phyloutils --- mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default-cli) projectSucceeded edu.berkeley.compbio:phyloutils:0.93-SNAPSHOT sessionEnded [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 1:33.178s [INFO] Finished at: Sun Jul 08 00:56:00 UTC 2012 [INFO] Final Memory: 20M/48M [INFO] ------------------------------------------------------------------------ Projects to build: [MavenProject: edu.berkeley.compbio:phyloutils:0.93-SNAPSHOT @ /media/ephemeral0/workspace/phyloutils/pom.xml] [JENKINS] Archiving /media/ephemeral0/workspace/phyloutils/pom.xml to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/modules/edu.berkeley.compbio$phyloutils/builds/2012-07-07_20-54-07/archive/edu.berkeley.compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-SNAPSHOT.pom [JENKINS] Archiving /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.93-SNAPSHOT.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/modules/edu.berkeley.compbio$phyloutils/builds/2012-07-07_20-54-07/archive/edu.berkeley.compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-SNAPSHOT.jar [JENKINS] Archiving /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.93-SNAPSHOT-sources.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/modules/edu.berkeley.compbio$phyloutils/builds/2012-07-07_20-54-07/archive/edu.berkeley.compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-SNAPSHOT-sources.jar [JENKINS] Archiving /media/ephemeral0/workspace/phyloutils/target/phyloutils-0.93-SNAPSHOT-tests.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/phyloutils/modules/edu.berkeley.compbio$phyloutils/builds/2012-07-07_20-54-07/archive/edu.berkeley.compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-SNAPSHOT-tests.jar Waiting for Jenkins to finish collecting data channel stopped your Apache Maven build is setup to use a config with id org.jenkinsci.plugins.configfiles.maven.MavenSettingsConfig1337980147845 but cannot find the config Maven RedeployPublished use remote i-d20da2aa maven settings from : /home/ec2-user/.m2/settings.xml [ERROR] uniqueVersion == false is not anymore supported in maven 3 [INFO] Deployment in dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots (id=dev.davidsoergel.com.snapshot,uniqueVersion=false) Deploying the main artifact phyloutils-0.93-SNAPSHOT.jar Downloading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/maven-metadata.xml Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-20120708.005633-1.jar Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-20120708.005633-1.jar (2793 KB at 655.6 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-20120708.005633-1.pom Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-20120708.005633-1.pom (7 KB at 5.3 KB/sec) Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/maven-metadata.xml Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/maven-metadata.xml (289 B at 3.5 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/maven-metadata.xml Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/maven-metadata.xml (777 B at 4.1 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/maven-metadata.xml Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/maven-metadata.xml (328 B at 1.6 KB/sec) Deploying the main artifact phyloutils-0.93-SNAPSHOT-sources.jar Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-20120708.005633-1-sources.jar Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-20120708.005633-1-sources.jar (2779 KB at 1290.5 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/maven-metadata.xml Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/maven-metadata.xml (990 B at 3.8 KB/sec) Deploying the main artifact phyloutils-0.93-SNAPSHOT-tests.jar Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-20120708.005633-1-tests.jar Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/phyloutils-0.93-20120708.005633-1-tests.jar (11 KB at 9.5 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/maven-metadata.xml Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/phyloutils/0.93-SNAPSHOT/maven-metadata.xml (2 KB at 10.0 KB/sec) [INFO] Deployment done in 13 sec Finished: SUCCESS