FailedConsole Output

Started by user David Soergel
Building remotely on i-aefcc9c0 in workspace /media/ephemeral0/workspace/ncbitaxonomy
[ncbitaxonomy] $ hg showconfig paths.default
[ncbitaxonomy] $ hg pull --rev default
[ncbitaxonomy] $ hg update --clean --rev default
0 files updated, 0 files merged, 0 files removed, 0 files unresolved
[ncbitaxonomy] $ hg --config extensions.purge= clean --all
[ncbitaxonomy] $ hg log --rev . --template {node}
[ncbitaxonomy] $ hg log --rev . --template {rev}
[ncbitaxonomy] $ hg log --rev 8a643fe4834c2014fef5b8bf49ffeeaaaaa3fb47
[ncbitaxonomy] $ hg log --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev default:0 --follow --prune 8a643fe4834c2014fef5b8bf49ffeeaaaaa3fb47
Parsing POMs
[ncbitaxonomy] $ java -Xmx1024M -XX:MaxPermSize=256M -cp /media/ephemeral0/maven3-agent.jar:/media/ephemeral0/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.0.4/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /media/ephemeral0/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.0.4 /tmp/slave.jar /media/ephemeral0/maven3-interceptor.jar 49741
<===[JENKINS REMOTING CAPACITY]===>channel started
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
Executing Maven:  -B -f /media/ephemeral0/workspace/ncbitaxonomy/pom.xml -U -e clean source:jar package jar:test-jar
[INFO] Error stacktraces are turned on.
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ncbitaxonomy
[INFO] ncbitaxonomyClient
[INFO] ncbitaxonomyServer
Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/codehaus/mojo/maven-metadata.xml
Downloading: http://repo.maven.apache.org/maven2/org/codehaus/mojo/maven-metadata.xml
Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-metadata.xml
Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-metadata.xml
Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-metadata.xml (11 KB at 11.9 KB/sec)
Downloaded: http://repo.maven.apache.org/maven2/org/codehaus/mojo/maven-metadata.xml (22 KB at 10.6 KB/sec)
Downloaded: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-metadata.xml (11 KB at 4.8 KB/sec)
Downloaded: http://dev.davidsoergel.com/nexus/content/groups/public/org/codehaus/mojo/maven-metadata.xml (22 KB at 9.6 KB/sec)
Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml
Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml
Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml (692 B at 14.1 KB/sec)
Downloaded: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml (692 B at 0.7 KB/sec)
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ncbitaxonomy 0.91-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ncbitaxonomy ---
[INFO] 
[INFO] --- cobertura-maven-plugin:2.5.1:clean (clean) @ ncbitaxonomy ---
[INFO] Skipping cobertura mojo for project with packaging type 'pom'
Mar 21, 2013 2:52:18 AM hudson.maven.ExecutedMojo <init>
WARNING: Failed to getClass for org.apache.maven.plugin.source.SourceJarMojo
[INFO] 
[INFO] --- maven-source-plugin:2.2.1:jar (default-cli) @ ncbitaxonomy ---
[INFO] 
[INFO] --- maven-jar-plugin:2.4:test-jar (default) @ ncbitaxonomy ---
[WARNING] JAR will be empty - no content was marked for inclusion!
[INFO] Building jar: /media/ephemeral0/workspace/ncbitaxonomy/target/ncbitaxonomy-0.91-SNAPSHOT-tests.jar
[WARNING] JAR will be empty - no content was marked for inclusion!
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default) @ ncbitaxonomy ---
[INFO] Building jar: /media/ephemeral0/workspace/ncbitaxonomy/target/ncbitaxonomy-0.91-SNAPSHOT.jar
[INFO] [WARNING] JAR will be empty - no content was marked for inclusion!

[INFO] --- maven-jar-plugin:2.4:test-jar (default-cli) @ ncbitaxonomy ---
[WARNING] Artifact edu.berkeley.compbio:ncbitaxonomy:test-jar:tests:0.91-SNAPSHOT already attached to project, ignoring duplicate
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ncbitaxonomyClient 0.91-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/edu/berkeley/compbio/phyloutils/0.921/phyloutils-0.921.pom
Downloading: http://repo.maven.apache.org/maven2/edu/berkeley/compbio/phyloutils/0.921/phyloutils-0.921.pom
[WARNING] The POM for edu.berkeley.compbio:phyloutils:jar:0.921 is missing, no dependency information available
Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/edu/berkeley/compbio/phyloutils/0.921/phyloutils-0.921.jar
Downloading: http://repo.maven.apache.org/maven2/edu/berkeley/compbio/phyloutils/0.921/phyloutils-0.921.jar
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ncbitaxonomy ...................................... SUCCESS [33.123s]
[INFO] ncbitaxonomyClient ................................ FAILURE [1.100s]
[INFO] ncbitaxonomyServer ................................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 57.845s
[INFO] Finished at: Thu Mar 21 02:52:27 UTC 2013
[INFO] Final Memory: 10M/25M
[INFO] ------------------------------------------------------------------------
[JENKINS] Archiving /media/ephemeral0/workspace/ncbitaxonomy/ncbitaxonomyServer/pom.xml to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ncbitaxonomy/modules/edu.berkeley.compbio$ncbitaxonomyServer/builds/2013-03-20_22-50-53/archive/edu.berkeley.compbio/ncbitaxonomyServer/0.91-SNAPSHOT/ncbitaxonomyServer-0.91-SNAPSHOT.pom
[JENKINS] Archiving /media/ephemeral0/workspace/ncbitaxonomy/pom.xml to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ncbitaxonomy/modules/edu.berkeley.compbio$ncbitaxonomy/builds/2013-03-20_22-50-53/archive/edu.berkeley.compbio/ncbitaxonomy/0.91-SNAPSHOT/ncbitaxonomy-0.91-SNAPSHOT.pom
[JENKINS] Re-archiving /media/ephemeral0/workspace/ncbitaxonomy/target/ncbitaxonomy-0.91-SNAPSHOT.jar
[JENKINS] Archiving /media/ephemeral0/workspace/ncbitaxonomy/target/ncbitaxonomy-0.91-SNAPSHOT-tests.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ncbitaxonomy/modules/edu.berkeley.compbio$ncbitaxonomy/builds/2013-03-20_22-50-53/archive/edu.berkeley.compbio/ncbitaxonomy/0.91-SNAPSHOT/ncbitaxonomy-0.91-SNAPSHOT-tests.jar
[JENKINS] Archiving /media/ephemeral0/workspace/ncbitaxonomy/ncbitaxonomyClient/pom.xml to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ncbitaxonomy/modules/edu.berkeley.compbio$ncbitaxonomyClient/builds/2013-03-20_22-50-53/archive/edu.berkeley.compbio/ncbitaxonomyClient/0.91-SNAPSHOT/ncbitaxonomyClient-0.91-SNAPSHOT.pom
Waiting for Jenkins to finish collecting data
mavenExecutionResult exceptions not empty
message : Failed to execute goal on project ncbitaxonomyClient: Could not resolve dependencies for project edu.berkeley.compbio:ncbitaxonomyClient:jar:0.91-SNAPSHOT: Could not find artifact edu.berkeley.compbio:phyloutils:jar:0.921 in dev.davidsoergel.com (http://dev.davidsoergel.com/nexus/content/groups/public)
cause : Could not resolve dependencies for project edu.berkeley.compbio:ncbitaxonomyClient:jar:0.91-SNAPSHOT: Could not find artifact edu.berkeley.compbio:phyloutils:jar:0.921 in dev.davidsoergel.com (http://dev.davidsoergel.com/nexus/content/groups/public)
Stack trace : 
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal on project ncbitaxonomyClient: Could not resolve dependencies for project edu.berkeley.compbio:ncbitaxonomyClient:jar:0.91-SNAPSHOT: Could not find artifact edu.berkeley.compbio:phyloutils:jar:0.921 in dev.davidsoergel.com (http://dev.davidsoergel.com/nexus/content/groups/public)
	at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies(LifecycleDependencyResolver.java:210)
	at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.resolveProjectDependencies(LifecycleDependencyResolver.java:117)
	at org.apache.maven.lifecycle.internal.MojoExecutor.ensureDependenciesAreResolved(MojoExecutor.java:258)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:201)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
	at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239)
	at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158)
	at hudson.maven.Maven3Builder.call(Maven3Builder.java:100)
	at hudson.maven.Maven3Builder.call(Maven3Builder.java:66)
	at hudson.remoting.UserRequest.perform(UserRequest.java:118)
	at hudson.remoting.UserRequest.perform(UserRequest.java:48)
	at hudson.remoting.Request$2.run(Request.java:326)
	at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:662)
Caused by: org.apache.maven.project.DependencyResolutionException: Could not resolve dependencies for project edu.berkeley.compbio:ncbitaxonomyClient:jar:0.91-SNAPSHOT: Could not find artifact edu.berkeley.compbio:phyloutils:jar:0.921 in dev.davidsoergel.com (http://dev.davidsoergel.com/nexus/content/groups/public)
	at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve(DefaultProjectDependenciesResolver.java:189)
	at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies(LifecycleDependencyResolver.java:185)
	... 30 more
Caused by: org.sonatype.aether.resolution.DependencyResolutionException: Could not find artifact edu.berkeley.compbio:phyloutils:jar:0.921 in dev.davidsoergel.com (http://dev.davidsoergel.com/nexus/content/groups/public)
	at org.sonatype.aether.impl.internal.DefaultRepositorySystem.resolveDependencies(DefaultRepositorySystem.java:375)
	at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve(DefaultProjectDependenciesResolver.java:183)
	... 31 more
Caused by: org.sonatype.aether.resolution.ArtifactResolutionException: Could not find artifact edu.berkeley.compbio:phyloutils:jar:0.921 in dev.davidsoergel.com (http://dev.davidsoergel.com/nexus/content/groups/public)
	at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:538)
	at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:216)
	at org.sonatype.aether.impl.internal.DefaultRepositorySystem.resolveDependencies(DefaultRepositorySystem.java:358)
	... 32 more
Caused by: org.sonatype.aether.transfer.ArtifactNotFoundException: Could not find artifact edu.berkeley.compbio:phyloutils:jar:0.921 in dev.davidsoergel.com (http://dev.davidsoergel.com/nexus/content/groups/public)
	at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:947)
	at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:941)
	at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:669)
	at org.sonatype.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:60)
	... 3 more
channel stopped
Sending e-mails to: dev@davidsoergel.com
Finished: FAILURE