SuccessConsole Output

Started by upstream project "stats" build number 29
originally caused by:
 Started by upstream project "dsutils" build number 47
 originally caused by:
  Started by user David Soergel
Started by upstream project "trees" build number 24
originally caused by:
 Started by upstream project "dsutils" build number 47
 originally caused by:
  Started by user David Soergel
 Started by upstream project "stats" build number 29
 originally caused by:
  Started by upstream project "dsutils" build number 47
Building in workspace /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace
 > git rev-parse --is-inside-work-tree
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/davidsoergel/ml.git
Fetching upstream changes from https://github.com/davidsoergel/ml.git
 > git --version
 > git fetch --tags --progress https://github.com/davidsoergel/ml.git +refs/heads/*:refs/remotes/origin/*
 > git rev-parse origin/master^{commit}
Checking out Revision acbff993bf9adc80679f555c14bf8acb4c8bc58c (origin/master)
 > git config core.sparsecheckout
 > git checkout -f acbff993bf9adc80679f555c14bf8acb4c8bc58c
 > git rev-list acbff993bf9adc80679f555c14bf8acb4c8bc58c
Parsing POMs
[workspace] $ java -Xmx1024M -XX:MaxPermSize=256M -cp /usr/share/apache-tomcat-7.0.22/.jenkins/plugins/maven-plugin/WEB-INF/lib/maven31-agent-1.5.jar:/usr/share/apache-tomcat-7.0.22/.jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1/boot/plexus-classworlds-2.5.1.jar:/usr/share/apache-tomcat-7.0.22/.jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1/conf/logging jenkins.maven3.agent.Maven31Main /usr/share/apache-tomcat-7.0.22/.jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1 /usr/share/apache-tomcat-7.0.22/webapps/jenkins/WEB-INF/lib/remoting-2.43.jar /usr/share/apache-tomcat-7.0.22/.jenkins/plugins/maven-plugin/WEB-INF/lib/maven31-interceptor-1.5.jar /usr/share/apache-tomcat-7.0.22/.jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-commons-1.5.jar 39462
<===[JENKINS REMOTING CAPACITY]===>channel started
Executing Maven:  -B -f /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/pom.xml -U -e clean source:jar package jar:test-jar javadoc:jar
[INFO] Error stacktraces are turned on.
[WARNING] 
[WARNING] Some problems were encountered while building the effective settings
[WARNING] Unrecognised tag: 'scmVersionType' (position: START_TAG seen ...</username>\n    <scmVersionType>... @22:21)  @ /usr/share/apache-tomcat-7.0.22/.m2/settings.xml, line 22, column 21
[WARNING] 
[INFO] Scanning for projects...
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[INFO] Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/codehaus/mojo/maven-metadata.xml
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[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ml 0.93-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ ml ---
[INFO] Deleting /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target
[INFO] 
[INFO] --- cobertura-maven-plugin:2.5.1:clean (clean) @ ml ---
[INFO] 
[INFO] >>> maven-source-plugin:2.2.1:jar (default-cli) @ ml >>>
[WARNING] Failed to getClass for org.apache.maven.plugin.source.SourceJarMojo
[INFO] 
[INFO] <<< maven-source-plugin:2.2.1:jar (default-cli) @ ml <<<
[INFO] 
[INFO] --- maven-source-plugin:2.2.1:jar (default-cli) @ ml ---
[INFO] Building jar: /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/ml-0.93-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ ml ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ml ---
[INFO] Compiling 103 source files to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/classes
[INFO] 
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ ml ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/test/resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ml ---
[INFO] Compiling 5 source files to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ml ---
[INFO] Surefire report directory: /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running TestSuite
2014-07-06 18:07:49,608 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAgglomerativeClustering - Batch clustering remaining 6 nodes
2014-07-06 18:07:49,704 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAverageLinkageTest - 
 l=nu w=6.00 [Cluster 10] n=6 sd=0.00
	| l=29.91 w=1.00 [Cluster 5] n=1 sd=0.00
	| l=29.91 w=5.00 [Cluster 9] n=5 sd=0.00
	|	| l=22.45 w=1.00 [Cluster 4] n=1 sd=0.00
	|	| l=22.45 w=4.00 [Cluster 8] n=4 sd=0.00
	|	|	| l=15.73 w=1.00 [Cluster 3] n=1 sd=0.00
	|	|	| l=15.73 w=3.00 [Cluster 7] n=3 sd=0.00
	|	|	|	| l=10.07 w=1.00 [Cluster 2] n=1 sd=0.00
	|	|	|	| l=10.07 w=2.00 [Cluster 6] n=2 sd=0.00
	|	|	|	|	| l=0.50 w=1.00 [Cluster 0] n=1 sd=0.00
	|	|	|	|	| l=0.50 w=1.00 [Cluster 1] n=1 sd=0.00

2014-07-06 18:07:49,705 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAverageLinkageTest - found largestLengthSpan = 108.56383323669434
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.232 sec

Results :

Tests run: 12, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ml ---
[INFO] Building jar: /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/ml-0.93-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-jar-plugin:2.4:test-jar (default) @ ml ---
[INFO] Building jar: /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/ml-0.93-SNAPSHOT-tests.jar
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default) @ ml ---
[INFO] 
[INFO] --- maven-jar-plugin:2.4:test-jar (default-cli) @ ml ---
[INFO] 
[INFO] --- maven-javadoc-plugin:2.9.1:jar (default-cli) @ ml ---
[INFO] 
Loading source files for package edu.berkeley.compbio.ml.distancemeasure...
Loading source files for package edu.berkeley.compbio.ml...
Loading source files for package edu.berkeley.compbio.ml.cluster...
Loading source files for package edu.berkeley.compbio.ml.cluster.stats...
Loading source files for package edu.berkeley.compbio.ml.cluster.hierarchical...
Loading source files for package edu.berkeley.compbio.ml.cluster.kohonen...
Loading source files for package edu.berkeley.compbio.ml.cluster.bayesian...
Loading source files for package edu.berkeley.compbio.ml.cluster.kmeans...
Loading source files for package edu.berkeley.compbio.ml.mcmc...
Loading source files for package edu.berkeley.compbio.ml.mcmc.mcmcmc...
Constructing Javadoc information...
Standard Doclet version 1.6.0_27
Building tree for all the packages and classes...
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Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/apidocs/edu/berkeley/compbio/ml//BinaryCrossValidationResults.html...
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Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/apidocs/edu/berkeley/compbio/ml/cluster//CentroidClusteringUtils.html...
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Generating /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/apidocs/edu/berkeley/compbio/ml/cluster//SampleInitializedOnlineClusteringMethod.html...
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[WARNING] Javadoc Warnings
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/BinaryCrossValidationResults.java:95: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidCluster.java:121: warning - Tag @see cannot be used in inline documentation.  It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidCluster.java:121: warning - Tag @see: reference not found: ClusteringMethod.computeClusterStdDevs
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/AbstractClusteringMethod.java:672: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/AbstractClusteringMethod.java:315: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/AdditiveClusterable.java:58: warning - @param argument "object" is not a parameter name.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/BasicCentroidCluster.java:61: warning - @inheritDoc used but addAll(CentroidCluster<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/BasicCentroidCluster.java:69: warning - @inheritDoc used but removeAll(CentroidCluster<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/BasicCentroidCluster.java:61: warning - @inheritDoc used but addAll(CentroidCluster<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/BasicCentroidCluster.java:69: warning - @inheritDoc used but removeAll(CentroidCluster<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/BatchClusteringMethod.java:38: warning - @param argument "testIterator" is not a parameter name.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidCluster.java:121: warning - Tag @see cannot be used in inline documentation.  It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidCluster.java:121: warning - Tag @see: reference not found: ClusteringMethod.computeClusterStdDevs
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidCluster.java:121: warning - Tag @see cannot be used in inline documentation.  It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidClusteringUtils.java:117: warning - @inheritDoc used but shortClusteringStats(Collection<? extends CentroidCluster<T>>, DissimilarityMeasure<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidClusteringUtils.java:117: warning - @inheritDoc used but shortClusteringStats(Collection<? extends CentroidCluster<T>>, DissimilarityMeasure<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidClusteringUtils.java:171: warning - @return tag cannot be used in method with void return type.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/ClusterableDoubleArray.java:195: warning - @inheritDoc used but getExclusiveLabel() does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/ClusterableDoubleArray.java:195: warning - @inheritDoc used but getExclusiveLabel() does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/SampleInitializedBatchClusteringMethod.java:31: warning - @param argument "initSamples" is not a parameter name.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/SupervisedClusteringMethod.java:33: warning - @param argument "trainingCollectionIteratorFactory" is not a parameter name.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/SupervisedClusteringMethod.java:33: warning - @param argument "prototypeFactory" is not a parameter name.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/SupervisedClusteringMethod.java:33: warning - @param argument "trainingEpochs" is not a parameter name.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/UnsupervisedClusteringMethod.java:46: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/hierarchical/BatchHierarchicalClusteringMethod.java:38: warning - @Author is an unknown tag -- same as a known tag except for case.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/hierarchical/BatchHierarchicalClusteringMethod.java:38: warning - @Version is an unknown tag -- same as a known tag except for case.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidCluster.java:121: warning - Tag @see cannot be used in inline documentation.  It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidCluster.java:121: warning - Tag @see: reference not found: ClusteringMethod.computeClusterStdDevs
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/hierarchical/HierarchicalCentroidCluster.java:290: warning - @return tag cannot be used in method with void return type.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/BruteForceSearchStrategy.java:35: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/CoarseGridSearchStrategy.java:54: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/HillClimbingSearchStrategy.java:48: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/KohonenSOM2D.java:56: warning - @Author is an unknown tag -- same as a known tag except for case.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/KohonenSOM2D.java:56: warning - @Version is an unknown tag -- same as a known tag except for case.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/KohonenSOM2D.java:217: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/KohonenSOM2D.java:437: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/KohonenSOMnD.java:52: warning - @Author is an unknown tag -- same as a known tag except for case.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/KohonenSOMnD.java:52: warning - @Version is an unknown tag -- same as a known tag except for case.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/KohonenSOMnD.java:327: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/NearCurrentPositionSearchStrategy.java:45: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/NeighborhoodCollectingLabelDiffuser.java:29: warning - @Author is an unknown tag -- same as a known tag except for case.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/kohonen/NeighborhoodCollectingLabelDiffuser.java:29: warning - @Version is an unknown tag -- same as a known tag except for case.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/KNNClustering.java:80: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/MultiNeighborClustering.java:300: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/LabelDecomposingBayesianClustering.java:86: warning - @inheritDoc used but initializeWithSamples(ClusterableIterator<T>, int) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/LabelDecomposingBayesianClustering.java:86: warning - @inheritDoc used but initializeWithSamples(ClusterableIterator<T>, int) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/MultiNeighborClustering.java:174: warning - @inheritDoc used but addUpNeighborVotes(TreeMultimap<Double, ClusterMove<T, CentroidCluster<T>>>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/MultiNeighborClustering.java:229: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/MultiNeighborClustering.java:174: warning - @inheritDoc used but addUpNeighborVotes(TreeMultimap<Double, ClusterMove<T, CentroidCluster<T>>>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/TacoaClustering.java:174: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/mcmc/DataCollector.java:64: warning - Tag @see: missing '#': "MonteCarloState.writeToDataCollector()"
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/mcmc/DataCollector.java:64: warning - Tag @see: can't find MonteCarloState.writeToDataCollector() in edu.berkeley.compbio.ml.mcmc.DataCollector
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/mcmc/DataCollector.java:64: warning - Tag @see cannot be used in inline documentation.  It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/mcmc/DataCollector.java:64: warning - Tag @see cannot be used in inline documentation.  It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/mcmc/MonteCarloState.java:28: warning - @return tag has no arguments.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/mcmc/DataCollector.java:64: warning - Tag @see cannot be used in inline documentation.  It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/MultiNeighborClustering.java:174: warning - @inheritDoc used but addUpNeighborVotes(TreeMultimap<Double, ClusterMove<T, CentroidCluster<T>>>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/LabelDecomposingBayesianClustering.java:86: warning - @inheritDoc used but initializeWithSamples(ClusterableIterator<T>, int) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/BasicCentroidCluster.java:61: warning - @inheritDoc used but addAll(CentroidCluster<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/BasicCentroidCluster.java:69: warning - @inheritDoc used but removeAll(CentroidCluster<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidClusteringUtils.java:117: warning - @inheritDoc used but shortClusteringStats(Collection<? extends CentroidCluster<T>>, DissimilarityMeasure<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/MultiNeighborClustering.java:174: warning - @inheritDoc used but addUpNeighborVotes(TreeMultimap<Double, ClusterMove<T, CentroidCluster<T>>>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidClusteringUtils.java:117: warning - @inheritDoc used but shortClusteringStats(Collection<? extends CentroidCluster<T>>, DissimilarityMeasure<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/MultiNeighborClustering.java:174: warning - @inheritDoc used but addUpNeighborVotes(TreeMultimap<Double, ClusterMove<T, CentroidCluster<T>>>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/BasicCentroidCluster.java:61: warning - @inheritDoc used but addAll(CentroidCluster<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/MultiNeighborClustering.java:174: warning - @inheritDoc used but addUpNeighborVotes(TreeMultimap<Double, ClusterMove<T, CentroidCluster<T>>>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/ClusterableDoubleArray.java:195: warning - @inheritDoc used but getExclusiveLabel() does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/bayesian/LabelDecomposingBayesianClustering.java:86: warning - @inheritDoc used but initializeWithSamples(ClusterableIterator<T>, int) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/BasicCentroidCluster.java:69: warning - @inheritDoc used but removeAll(CentroidCluster<T>) does not override or implement any method.
[WARNING] /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/src/main/java/edu/berkeley/compbio/ml/cluster/CentroidClusteringUtils.java:117: warning - @inheritDoc used but shortClusteringStats(Collection<? extends CentroidCluster<T>>, DissimilarityMeasure<T>) does not override or implement any method.
[INFO] Fixed Javadoc frame injection vulnerability (CVE-2013-1571) in 1 files.
[INFO] Building jar: /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/ml-0.93-SNAPSHOT-javadoc.jar
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 46.090s
[INFO] Finished at: Sun Jul 06 18:08:12 EDT 2014
[INFO] Final Memory: 16M/41M
[INFO] ------------------------------------------------------------------------
[JENKINS] Archiving /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/pom.xml to edu.berkeley.compbio/ml/0.93-SNAPSHOT/ml-0.93-SNAPSHOT.pom
[JENKINS] Archiving /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/ml-0.93-SNAPSHOT.jar to edu.berkeley.compbio/ml/0.93-SNAPSHOT/ml-0.93-SNAPSHOT.jar
[JENKINS] Archiving /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/ml-0.93-SNAPSHOT-sources.jar to edu.berkeley.compbio/ml/0.93-SNAPSHOT/ml-0.93-SNAPSHOT-sources.jar
[JENKINS] Archiving /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/ml-0.93-SNAPSHOT-tests.jar to edu.berkeley.compbio/ml/0.93-SNAPSHOT/ml-0.93-SNAPSHOT-tests.jar
[JENKINS] Archiving /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/workspace/target/ml-0.93-SNAPSHOT-javadoc.jar to edu.berkeley.compbio/ml/0.93-SNAPSHOT/ml-0.93-SNAPSHOT-javadoc.jar
channel stopped
Maven RedeployPublisher use remote  maven settings from : /usr/share/apache-tomcat-7.0.22/.m2/settings.xml
[ERROR] uniqueVersion == false is not anymore supported in maven 3
[INFO] Deployment in dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots (id=dev.davidsoergel.com.snapshot,uniqueVersion=false)
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Deploying the main artifact ml-0.93-SNAPSHOT-sources.jar
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Deploying the main artifact ml-0.93-SNAPSHOT-tests.jar
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Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.93-SNAPSHOT/ml-0.93-20140706.220813-7-tests.jar (17 KB at 51.0 KB/sec)
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Deploying the main artifact ml-0.93-SNAPSHOT-javadoc.jar
Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.93-SNAPSHOT/ml-0.93-20140706.220813-7-javadoc.jar
Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.93-SNAPSHOT/ml-0.93-20140706.220813-7-javadoc.jar (697 KB at 2853.6 KB/sec)
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[INFO] Deployment done in 2.5 sec
Warning: you have no plugins providing access control for builds, so falling back to legacy behavior of permitting any downstream builds to be triggered
Triggering a new build of msensr
Triggering a new build of jlibsvm
Triggering a new build of ml-docs-deploy
Finished: SUCCESS