SuccessConsole Output

Started by upstream project "stats" build number 20
originally caused by:
 Started by an SCM change
Started by upstream project "trees" build number 19
originally caused by:
 Started by upstream project "stats" build number 20
 originally caused by:
  Started by an SCM change
Started by upstream project "runutils" build number 23
originally caused by:
 Started by upstream project "trees" build number 19
 originally caused by:
  Started by upstream project "stats" build number 20
  originally caused by:
   Started by an SCM change
Building remotely on i-ee23f782 in workspace /media/ephemeral0/workspace/ml
Unpacking http://archive.apache.org/dist/maven/binaries/apache-maven-3.0.4-bin.zip to /media/ephemeral0/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.0.4 on i-ee23f782
$ hg clone --rev default --noupdate ssh://jenkins@dev.davidsoergel.com//home/hg/ml /media/ephemeral0/workspace/ml
adding changesets
adding manifests
adding file changes
added 597 changesets with 2605 changes to 200 files
[ml] $ hg update --rev default
114 files updated, 0 files merged, 0 files removed, 0 files unresolved
[ml] $ hg log --rev . --template {node}
[ml] $ hg log --rev . --template {rev}
[ml] $ hg log --rev f0a573a21ebd75efd0538f45678f391543948836
[ml] $ hg log --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev default:0 --follow --prune f0a573a21ebd75efd0538f45678f391543948836
Parsing POMs
Downloaded artifact http://dev.davidsoergel.com/nexus/content/groups/public//com/davidsoergel/basepom/1.01/basepom-1.01.pom
[ml] $ java -Xmx1024M -XX:MaxPermSize=256M -cp /media/ephemeral0/maven3-agent.jar:/media/ephemeral0/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.0.4/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /media/ephemeral0/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.0.4 /tmp/slave.jar /media/ephemeral0/maven3-interceptor.jar 59936
<===[JENKINS REMOTING CAPACITY]===>channel started
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
Executing Maven:  -B -f /media/ephemeral0/workspace/ml/pom.xml -U -e clean source:jar package jar:test-jar
[INFO] Error stacktraces are turned on.
[INFO] Scanning for projects...
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[INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.93-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ml ---
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[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/ml/src/main/resources
[INFO] Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/maven-core/2.0.9/maven-core-2.0.9.pom

[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ml ---
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[INFO] Compiling 103 source files to /media/ephemeral0/workspace/ml/target/classes
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/ml/src/test/resources

[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ml ---
[INFO] [INFO] Compiling 5 source files to /media/ephemeral0/workspace/ml/target/test-classes

[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ml ---
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[INFO] 
[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ml ---
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[INFO] Surefire report directory: /media/ephemeral0/workspace/ml/target/surefire-reports
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-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running TestSuite
2013-04-02 14:04:11,837 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAgglomerativeClustering - Batch clustering remaining 6 nodes
2013-04-02 14:04:11,939 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAverageLinkageTest - 
 l=nu w=6.00 [Cluster 10] n=6 sd=0.00
	| l=29.91 w=1.00 [Cluster 5] n=1 sd=0.00
	| l=29.91 w=5.00 [Cluster 9] n=5 sd=0.00
	|	| l=22.45 w=1.00 [Cluster 4] n=1 sd=0.00
	|	| l=22.45 w=4.00 [Cluster 8] n=4 sd=0.00
	|	|	| l=15.73 w=1.00 [Cluster 3] n=1 sd=0.00
	|	|	| l=15.73 w=3.00 [Cluster 7] n=3 sd=0.00
	|	|	|	| l=10.07 w=1.00 [Cluster 2] n=1 sd=0.00
	|	|	|	| l=10.07 w=2.00 [Cluster 6] n=2 sd=0.00
	|	|	|	|	| l=0.50 w=1.00 [Cluster 0] n=1 sd=0.00
	|	|	|	|	| l=0.50 w=1.00 [Cluster 1] n=1 sd=0.00

2013-04-02 14:04:11,941 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAverageLinkageTest - found largestLengthSpan = 108.56383323669434
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.342 sec

Results :

Tests run: 12, Failures: 0, Errors: 0, Skipped: 0

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[INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.93-SNAPSHOT.jar
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[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1:36.495s
[INFO] Finished at: Tue Apr 02 14:04:19 UTC 2013
[INFO] Final Memory: 15M/43M
[INFO] ------------------------------------------------------------------------
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