Started by upstream project "runutils" build number 14 Started by upstream project "runutils" build number 15 Started by an SCM change Building remotely on i-2c07a854 in workspace /media/ephemeral0/workspace/ml [ml] $ hg showconfig paths.default [ml] $ hg pull --rev default [ml] $ hg update --clean --rev default 2 files updated, 0 files merged, 0 files removed, 0 files unresolved [ml] $ hg --config extensions.purge= clean --all [ml] $ hg log --rev . --template {node} [ml] $ hg log --rev . --template {rev} [ml] $ hg log --rev 522de367534e4ad29b9058f89156006b1b65b756 [ml] $ hg log --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev default:0 --follow --prune 522de367534e4ad29b9058f89156006b1b65b756 your Apache Maven build is setup to use a config with id org.jenkinsci.plugins.configfiles.maven.MavenSettingsConfig1337980147845 but cannot find the config Parsing POMs Modules changed, recalculating dependency graph [ml] $ /usr/java/default/bin/java -Xmx1024M -XX:MaxPermSize=256M -cp /media/ephemeral0/maven3-agent.jar:/media/ephemeral0/tools/Maven/Maven_3.0.4/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /media/ephemeral0/tools/Maven/Maven_3.0.4 /tmp/slave.jar /media/ephemeral0/maven3-interceptor.jar 40960 <===[JENKINS REMOTING CAPACITY]===>channel started log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter). log4j:WARN Please initialize the log4j system properly. Executing Maven: -B -f /media/ephemeral0/workspace/ml/pom.xml -U -e clean source:jar package jar:test-jar [INFO] Error stacktraces are turned on. [INFO] Scanning for projects... Projects to build: [MavenProject: edu.berkeley.compbio:ml:0.912-SNAPSHOT @ /media/ephemeral0/workspace/ml/pom.xml] Downloading: http://repo.maven.apache.org/maven2/org/codehaus/mojo/maven-metadata.xml Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/codehaus/mojo/maven-metadata.xml Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-metadata.xml Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-metadata.xml Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-metadata.xml (11 KB at 6.7 KB/sec) Downloaded: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-metadata.xml (11 KB at 5.0 KB/sec) Downloaded: http://repo.maven.apache.org/maven2/org/codehaus/mojo/maven-metadata.xml (21 KB at 4.9 KB/sec) Downloaded: http://dev.davidsoergel.com/nexus/content/groups/public/org/codehaus/mojo/maven-metadata.xml (21 KB at 4.7 KB/sec) Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml (632 B at 29.4 KB/sec) Downloaded: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/plugins/maven-source-plugin/maven-metadata.xml (632 B at 2.4 KB/sec) projectStarted edu.berkeley.compbio:ml:0.912-SNAPSHOT [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ml 0.912-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/conja/1.06-SNAPSHOT/maven-metadata.xml Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/conja/1.06-SNAPSHOT/maven-metadata.xml (2 KB at 1.1 KB/sec) mojoStarted org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean) [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ml --- mojoSucceeded org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean) mojoStarted org.codehaus.mojo:cobertura-maven-plugin:2.5.1(clean) [INFO] [INFO] --- cobertura-maven-plugin:2.5.1:clean (clean) @ ml --- mojoSucceeded org.codehaus.mojo:cobertura-maven-plugin:2.5.1(clean) Jul 08, 2012 12:59:30 AM hudson.maven.ExecutedMojo <init> WARNING: Failed to getClass for org.apache.maven.plugin.source.SourceJarMojo mojoStarted org.apache.maven.plugins:maven-source-plugin:2.1.2(default-cli) [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (default-cli) @ ml --- [INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-sources.jar mojoSucceeded org.apache.maven.plugins:maven-source-plugin:2.1.2(default-cli) mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-resources) [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ml --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/ml/src/main/resources mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-resources) mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compile) [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ml --- [INFO] Compiling 103 source files to /media/ephemeral0/workspace/ml/target/classes mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compile) [debug] execute contextualize mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-testResources)[INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/ml/src/test/resources [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ml --- mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-testResources) mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-testCompile) [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ml --- [INFO] Compiling 5 source files to /media/ephemeral0/workspace/ml/target/test-classes mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-testCompile) mojoStarted org.apache.maven.plugins:maven-surefire-plugin:2.12(default-test) [INFO] [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ml --- [INFO] Surefire report directory: /media/ephemeral0/workspace/ml/target/surefire-reports ------------------------------------------------------- T E S T S ------------------------------------------------------- Running TestSuite 2012-07-08 01:00:25,528 [main] INFO edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAgglomerativeClustering - Batch clustering remaining 6 nodes 2012-07-08 01:00:25,654 [main] INFO edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAverageLinkageTest - l=nu w=6.00 [Cluster 10] n=6 sd=0.00 | l=29.91 w=1.00 [Cluster 5] n=1 sd=0.00 | l=29.91 w=5.00 [Cluster 9] n=5 sd=0.00 | | l=22.45 w=1.00 [Cluster 4] n=1 sd=0.00 | | l=22.45 w=4.00 [Cluster 8] n=4 sd=0.00 | | | l=15.73 w=1.00 [Cluster 3] n=1 sd=0.00 | | | l=15.73 w=3.00 [Cluster 7] n=3 sd=0.00 | | | | l=10.07 w=1.00 [Cluster 2] n=1 sd=0.00 | | | | l=10.07 w=2.00 [Cluster 6] n=2 sd=0.00 | | | | | l=0.50 w=1.00 [Cluster 0] n=1 sd=0.00 | | | | | l=0.50 w=1.00 [Cluster 1] n=1 sd=0.00 2012-07-08 01:00:25,656 [main] INFO edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAverageLinkageTest - found largestLengthSpan = 108.56383323669434 Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.431 sec Results : Tests run: 12, Failures: 0, Errors: 0, Skipped: 0 mojoSucceeded org.apache.maven.plugins:maven-surefire-plugin:2.12(default-test) [JENKINS] Recording test results mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default-jar) [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ml --- [INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT.jar mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default-jar) mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default) [INFO] [INFO] --- maven-jar-plugin:2.4:test-jar (default) @ ml --- [INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-tests.jar mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default) mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default) [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default) @ ml --- mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default) mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default-cli) [INFO] [INFO] --- maven-jar-plugin:2.4:test-jar (default-cli) @ ml --- [WARNING] Artifact edu.berkeley.compbio:ml:test-jar:tests:0.912-SNAPSHOT already attached to project, ignoring duplicate mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default-cli) projectSucceeded edu.berkeley.compbio:ml:0.912-SNAPSHOT sessionEnded [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 1:46.565s [INFO] Finished at: Sun Jul 08 01:00:45 UTC 2012 [INFO] Final Memory: 19M/46M [INFO] ------------------------------------------------------------------------ Projects to build: [MavenProject: edu.berkeley.compbio:ml:0.912-SNAPSHOT @ /media/ephemeral0/workspace/ml/pom.xml] [JENKINS] Archiving /media/ephemeral0/workspace/ml/pom.xml to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_20-58-37/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT.pom [JENKINS] Archiving /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_20-58-37/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT.jar [JENKINS] Archiving /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-sources.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_20-58-37/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT-sources.jar [JENKINS] Archiving /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-tests.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_20-58-37/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT-tests.jar Waiting for Jenkins to finish collecting data channel stopped your Apache Maven build is setup to use a config with id org.jenkinsci.plugins.configfiles.maven.MavenSettingsConfig1337980147845 but cannot find the config Maven RedeployPublished use remote i-2c07a854 maven settings from : /home/ec2-user/.m2/settings.xml [ERROR] uniqueVersion == false is not anymore supported in maven 3 [INFO] Deployment in dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots (id=dev.davidsoergel.com.snapshot,uniqueVersion=false) Deploying the main artifact ml-0.912-SNAPSHOT.jar Downloading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml Downloaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml (2 KB at 25.5 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.010057-17.jar Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.010057-17.jar (195 KB at 667.5 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.010057-17.pom Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.010057-17.pom (7 KB at 14.0 KB/sec) Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/maven-metadata.xml Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/maven-metadata.xml (282 B at 6.1 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml (2 KB at 4.3 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/maven-metadata.xml Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/maven-metadata.xml (282 B at 1.3 KB/sec) Deploying the main artifact ml-0.912-SNAPSHOT-sources.jar Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.010057-17-sources.jar Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.010057-17-sources.jar (187 KB at 791.8 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml (2 KB at 4.7 KB/sec) Deploying the main artifact ml-0.912-SNAPSHOT-tests.jar Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.010057-17-tests.jar Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.010057-17-tests.jar (17 KB at 38.1 KB/sec) Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml (2 KB at 5.1 KB/sec) [INFO] Deployment done in 2.9 sec Triggering a new build of jlibsvm #14 Triggering a new build of sequtils #12 Finished: SUCCESS