SuccessConsole Output

Started by upstream project "runutils" build number 13
Building remotely on i-2c07a854 in workspace /media/ephemeral0/workspace/ml
$ hg clone --rev default --noupdate ssh://jenkins@dev.davidsoergel.com//home/hg/ml /media/ephemeral0/workspace/ml
adding changesets
adding manifests
adding file changes
added 584 changesets with 2590 changes to 200 files
[ml] $ hg update --rev default
115 files updated, 0 files merged, 0 files removed, 0 files unresolved
[ml] $ hg log --rev . --template {node}
[ml] $ hg log --rev . --template {rev}
[ml] $ hg log --rev 522de367534e4ad29b9058f89156006b1b65b756
[ml] $ hg log --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev default:0 --follow --prune 522de367534e4ad29b9058f89156006b1b65b756
 your Apache Maven build is setup to use a config with id org.jenkinsci.plugins.configfiles.maven.MavenSettingsConfig1337980147845 but cannot find the config
Parsing POMs
Downloaded artifact http://dev.davidsoergel.com/nexus/content/repositories/snapshots//com/davidsoergel/basepom/0.99-SNAPSHOT/maven-metadata.xml
Downloaded artifact http://dev.davidsoergel.com/nexus/content/repositories/snapshots//com/davidsoergel/basepom/0.99-SNAPSHOT/basepom-0.99-20120706.120427-7.pom
[ml] $ /usr/java/default/bin/java -Xmx1024M -XX:MaxPermSize=256M -cp /media/ephemeral0/maven3-agent.jar:/media/ephemeral0/tools/Maven/Maven_3.0.4/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /media/ephemeral0/tools/Maven/Maven_3.0.4 /tmp/slave.jar /media/ephemeral0/maven3-interceptor.jar 45742
<===[JENKINS REMOTING CAPACITY]===>channel started
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
Executing Maven:  -B -f /media/ephemeral0/workspace/ml/pom.xml -U -e clean source:jar package jar:test-jar
[INFO] Error stacktraces are turned on.
[INFO] Scanning for projects...
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Projects to build: [MavenProject: edu.berkeley.compbio:ml:0.912-SNAPSHOT @ /media/ephemeral0/workspace/ml/pom.xml]
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projectStarted edu.berkeley.compbio:ml:0.912-SNAPSHOT
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ml 0.912-SNAPSHOT
[INFO] ------------------------------------------------------------------------
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mojoStarted org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean)
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ml ---
mojoSucceeded org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean)
mojoStarted org.codehaus.mojo:cobertura-maven-plugin:2.5.1(clean)
[INFO] 
[INFO] --- cobertura-maven-plugin:2.5.1:clean (clean) @ ml ---
mojoSucceeded org.codehaus.mojo:cobertura-maven-plugin:2.5.1(clean)
Jul 08, 2012 12:37:17 AM hudson.maven.ExecutedMojo <init>
WARNING: Failed to getClass for org.apache.maven.plugin.source.SourceJarMojo
mojoStarted org.apache.maven.plugins:maven-source-plugin:2.1.2(default-cli)
[INFO] 
[INFO] --- maven-source-plugin:2.1.2:jar (default-cli) @ ml ---
Downloading: http://dev.davidsoergel.com/nexus/content/groups/public/org/apache/maven/maven-archiver/2.4.1/maven-archiver-2.4.1.pom
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[INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-sources.jar
mojoSucceeded org.apache.maven.plugins:maven-source-plugin:2.1.2(default-cli)
mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-resources)
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ml ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-resources)[INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/ml/src/main/resources

mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compile)
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ml ---
[INFO] Compiling 103 source files to /media/ephemeral0/workspace/ml/target/classes
mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compile)
mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-testResources)
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ml ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/ml/src/test/resources
mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-testResources)
mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-testCompile)
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ml ---
[INFO] Compiling 5 source files to /media/ephemeral0/workspace/ml/target/test-classes
mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-testCompile)
mojoStarted org.apache.maven.plugins:maven-surefire-plugin:2.12(default-test)
[INFO] 
[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ml ---
[INFO] Surefire report directory: /media/ephemeral0/workspace/ml/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running TestSuite
2012-07-08 00:37:53,195 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAgglomerativeClustering - Batch clustering remaining 6 nodes
2012-07-08 00:37:53,232 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAverageLinkageTest - 
 l=nu w=6.00 [Cluster 10] n=6 sd=0.00
	| l=29.91 w=1.00 [Cluster 5] n=1 sd=0.00
	| l=29.91 w=5.00 [Cluster 9] n=5 sd=0.00
	|	| l=22.45 w=1.00 [Cluster 4] n=1 sd=0.00
	|	| l=22.45 w=4.00 [Cluster 8] n=4 sd=0.00
	|	|	| l=15.73 w=1.00 [Cluster 3] n=1 sd=0.00
	|	|	| l=15.73 w=3.00 [Cluster 7] n=3 sd=0.00
	|	|	|	| l=10.07 w=1.00 [Cluster 2] n=1 sd=0.00
	|	|	|	| l=10.07 w=2.00 [Cluster 6] n=2 sd=0.00
	|	|	|	|	| l=0.50 w=1.00 [Cluster 0] n=1 sd=0.00
	|	|	|	|	| l=0.50 w=1.00 [Cluster 1] n=1 sd=0.00

2012-07-08 00:37:53,233 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAverageLinkageTest - found largestLengthSpan = 108.56383323669434
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.839 sec

Results :

Tests run: 12, Failures: 0, Errors: 0, Skipped: 0

mojoSucceeded org.apache.maven.plugins:maven-surefire-plugin:2.12(default-test)
[JENKINS] Recording test results
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default-jar)
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ml ---
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[INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT.jar
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default-jar)
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default)
[INFO] [INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-tests.jar

[INFO] --- maven-jar-plugin:2.4:test-jar (default) @ ml ---
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default)
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default)
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default) @ ml ---
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default)
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default-cli)
[INFO] 
[INFO] --- maven-jar-plugin:2.4:test-jar (default-cli) @ ml ---
[WARNING] Artifact edu.berkeley.compbio:ml:test-jar:tests:0.912-SNAPSHOT already attached to project, ignoring duplicate
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default-cli)
projectSucceeded edu.berkeley.compbio:ml:0.912-SNAPSHOT
sessionEnded
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1:03.700s
[INFO] Finished at: Sun Jul 08 00:37:59 UTC 2012
[INFO] Final Memory: 19M/47M
[INFO] ------------------------------------------------------------------------
Projects to build: [MavenProject: edu.berkeley.compbio:ml:0.912-SNAPSHOT @ /media/ephemeral0/workspace/ml/pom.xml]
[JENKINS] Archiving /media/ephemeral0/workspace/ml/pom.xml to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_20-36-44/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT.pom
[JENKINS] Archiving /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_20-36-44/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT.jar
[JENKINS] Archiving /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-sources.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_20-36-44/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT-sources.jar
[JENKINS] Archiving /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-tests.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_20-36-44/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT-tests.jar
Waiting for Jenkins to finish collecting data
channel stopped
 your Apache Maven build is setup to use a config with id org.jenkinsci.plugins.configfiles.maven.MavenSettingsConfig1337980147845 but cannot find the config
Maven RedeployPublished use remote i-2c07a854 maven settings from : /home/ec2-user/.m2/settings.xml
[ERROR] uniqueVersion == false is not anymore supported in maven 3
[INFO] Deployment in dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots (id=dev.davidsoergel.com.snapshot,uniqueVersion=false)
Deploying the main artifact ml-0.912-SNAPSHOT.jar
Downloading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml
Downloaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml (2 KB at 12.4 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.003804-16.jar
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.003804-16.jar (195 KB at 696.0 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.003804-16.pom
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.003804-16.pom (7 KB at 32.9 KB/sec)
Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/maven-metadata.xml
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Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml
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Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/maven-metadata.xml
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Deploying the main artifact ml-0.912-SNAPSHOT-sources.jar
Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.003804-16-sources.jar
Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.003804-16-sources.jar (187 KB at 857.5 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml (2 KB at 6.9 KB/sec)
Deploying the main artifact ml-0.912-SNAPSHOT-tests.jar
Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.003804-16-tests.jar
Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120708.003804-16-tests.jar (17 KB at 100.7 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml (2 KB at 5.2 KB/sec)
[INFO] Deployment done in 2.9 sec
Triggering a new build of jlibsvm #13
Triggering a new build of sequtils #11
Finished: SUCCESS