SuccessConsole Output

Started by upstream project "runutils" build number 12
Building remotely on i-541eb32c in workspace /media/ephemeral0/workspace/ml
$ hg clone --rev default --noupdate ssh://jenkins@dev.davidsoergel.com//home/hg/ml /media/ephemeral0/workspace/ml
adding changesets
adding manifests
adding file changes
added 584 changesets with 2590 changes to 200 files
[ml] $ hg update --rev default
115 files updated, 0 files merged, 0 files removed, 0 files unresolved
[ml] $ hg log --rev . --template {node}
[ml] $ hg log --rev . --template {rev}
[ml] $ hg log --rev 522de367534e4ad29b9058f89156006b1b65b756
[ml] $ hg log --template "<changeset node='{node}' author='{author|xmlescape}' rev='{rev}' date='{date}'><msg>{desc|xmlescape}</msg><added>{file_adds|stringify|xmlescape}</added><deleted>{file_dels|stringify|xmlescape}</deleted><files>{files|stringify|xmlescape}</files><parents>{parents}</parents></changeset>\n" --rev default:0 --follow --prune 522de367534e4ad29b9058f89156006b1b65b756
 your Apache Maven build is setup to use a config with id org.jenkinsci.plugins.configfiles.maven.MavenSettingsConfig1337980147845 but cannot find the config
Parsing POMs
Downloaded artifact http://dev.davidsoergel.com/nexus/content/repositories/snapshots//com/davidsoergel/basepom/0.99-SNAPSHOT/maven-metadata.xml
[ml] $ /usr/java/default/bin/java -Xmx1024M -XX:MaxPermSize=256M -cp /media/ephemeral0/maven3-agent.jar:/media/ephemeral0/tools/Maven/Maven_3.0.4/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /media/ephemeral0/tools/Maven/Maven_3.0.4 /tmp/slave.jar /media/ephemeral0/maven3-interceptor.jar 60498
<===[JENKINS REMOTING CAPACITY]===>channel started
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
Executing Maven:  -B -f /media/ephemeral0/workspace/ml/pom.xml -U -e clean source:jar package jar:test-jar
[INFO] Error stacktraces are turned on.
[INFO] Scanning for projects...
Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/basepom/0.99-SNAPSHOT/maven-metadata.xml
Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/basepom/0.99-SNAPSHOT/maven-metadata.xml (809 B at 1.4 KB/sec)
Projects to build: [MavenProject: edu.berkeley.compbio:ml:0.912-SNAPSHOT @ /media/ephemeral0/workspace/ml/pom.xml]
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Downloading: http://repo.maven.apache.org/maven2/org/codehaus/mojo/maven-metadata.xml
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projectStarted edu.berkeley.compbio:ml:0.912-SNAPSHOT
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ml 0.912-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/dsutils/1.04-SNAPSHOT/maven-metadata.xml
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Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/conja/1.06-SNAPSHOT/maven-metadata.xml
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Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/conja/1.06-SNAPSHOT/conja-1.06-20120707.191936-6.pom
Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/conja/1.06-SNAPSHOT/conja-1.06-20120707.191936-6.pom (4 KB at 12.6 KB/sec)
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Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/runutils/0.91-SNAPSHOT/runutils-0.91-20120707.192858-19.pom (5 KB at 28.4 KB/sec)
Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/stats/0.93-SNAPSHOT/maven-metadata.xml
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Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/runutils/0.91-SNAPSHOT/runutils-0.91-20120707.192858-19.jar
Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/conja/1.06-SNAPSHOT/conja-1.06-20120707.191936-6.jar (31 KB at 104.9 KB/sec)
Downloaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/com/davidsoergel/runutils/0.91-SNAPSHOT/runutils-0.91-20120707.192858-19.jar (40 KB at 132.8 KB/sec)
mojoStarted org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean)
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ml ---
mojoSucceeded org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean)
mojoStarted org.codehaus.mojo:cobertura-maven-plugin:2.5.1(clean)
[INFO] 
[INFO] --- cobertura-maven-plugin:2.5.1:clean (clean) @ ml ---
mojoSucceeded org.codehaus.mojo:cobertura-maven-plugin:2.5.1(clean)
Jul 07, 2012 7:30:35 PM hudson.maven.ExecutedMojo <init>
WARNING: Failed to getClass for org.apache.maven.plugin.source.SourceJarMojo
mojoStarted org.apache.maven.plugins:maven-source-plugin:2.1.2(default-cli)
[INFO] 
[INFO] --- maven-source-plugin:2.1.2:jar (default-cli) @ ml ---
[INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-sources.jar
mojoSucceeded org.apache.maven.plugins:maven-source-plugin:2.1.2(default-cli)
mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-resources)
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ml ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/ml/src/main/resources
mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-resources)
mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compile)
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ml ---
[INFO] Compiling 103 source files to /media/ephemeral0/workspace/ml/target/classes
mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compile)
mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-testResources)[debug] execute contextualize

[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ml ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /media/ephemeral0/workspace/ml/src/test/resources
mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-testResources)
mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-testCompile)
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ml ---
[INFO] Compiling 5 source files to /media/ephemeral0/workspace/ml/target/test-classes
mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-testCompile)
mojoStarted org.apache.maven.plugins:maven-surefire-plugin:2.12(default-test)
[INFO] 
[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ml ---
[INFO] Surefire report directory: /media/ephemeral0/workspace/ml/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running TestSuite
2012-07-07 19:31:50,100 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAgglomerativeClustering - Batch clustering remaining 6 nodes
2012-07-07 19:31:50,812 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAverageLinkageTest - 
 l=nu w=6.00 [Cluster 10] n=6 sd=0.00
	| l=29.91 w=1.00 [Cluster 5] n=1 sd=0.00
	| l=29.91 w=5.00 [Cluster 9] n=5 sd=0.00
	|	| l=22.45 w=1.00 [Cluster 4] n=1 sd=0.00
	|	| l=22.45 w=4.00 [Cluster 8] n=4 sd=0.00
	|	|	| l=15.73 w=1.00 [Cluster 3] n=1 sd=0.00
	|	|	| l=15.73 w=3.00 [Cluster 7] n=3 sd=0.00
	|	|	|	| l=10.07 w=1.00 [Cluster 2] n=1 sd=0.00
	|	|	|	| l=10.07 w=2.00 [Cluster 6] n=2 sd=0.00
	|	|	|	|	| l=0.50 w=1.00 [Cluster 0] n=1 sd=0.00
	|	|	|	|	| l=0.50 w=1.00 [Cluster 1] n=1 sd=0.00

2012-07-07 19:31:50,814 [main] INFO  edu.berkeley.compbio.ml.cluster.hierarchical.OnlineAverageLinkageTest - found largestLengthSpan = 108.56383323669434
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.58 sec

Results :

Tests run: 12, Failures: 0, Errors: 0, Skipped: 0

mojoSucceeded org.apache.maven.plugins:maven-surefire-plugin:2.12(default-test)
[JENKINS] Recording test results
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default-jar)
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ml ---
[INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT.jar
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default-jar)
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default)
[INFO] 
[INFO] --- maven-jar-plugin:2.4:test-jar (default) @ ml ---
[INFO] Building jar: /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-tests.jar
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default)
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default)
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default) @ ml ---
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default)
mojoStarted org.apache.maven.plugins:maven-jar-plugin:2.4(default-cli)
[INFO] 
[INFO] --- maven-jar-plugin:2.4:test-jar (default-cli) @ ml ---
[WARNING] Artifact edu.berkeley.compbio:ml:test-jar:tests:0.912-SNAPSHOT already attached to project, ignoring duplicate
mojoSucceeded org.apache.maven.plugins:maven-jar-plugin:2.4(default-cli)
projectSucceeded edu.berkeley.compbio:ml:0.912-SNAPSHOT
sessionEnded
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2:27.620s
[INFO] Finished at: Sat Jul 07 19:32:09 UTC 2012
[INFO] Final Memory: 19M/46M
[INFO] ------------------------------------------------------------------------
Projects to build: [MavenProject: edu.berkeley.compbio:ml:0.912-SNAPSHOT @ /media/ephemeral0/workspace/ml/pom.xml]
[JENKINS] Archiving /media/ephemeral0/workspace/ml/pom.xml to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_15-29-17/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT.pom
[JENKINS] Archiving /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_15-29-17/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT.jar
[JENKINS] Archiving /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-sources.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_15-29-17/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT-sources.jar
[JENKINS] Archiving /media/ephemeral0/workspace/ml/target/ml-0.912-SNAPSHOT-tests.jar to /usr/share/apache-tomcat-7.0.22/.jenkins/jobs/ml/modules/edu.berkeley.compbio$ml/builds/2012-07-07_15-29-17/archive/edu.berkeley.compbio/ml/0.912-SNAPSHOT/ml-0.912-SNAPSHOT-tests.jar
Waiting for Jenkins to finish collecting data
channel stopped
 your Apache Maven build is setup to use a config with id org.jenkinsci.plugins.configfiles.maven.MavenSettingsConfig1337980147845 but cannot find the config
Maven RedeployPublished use remote i-541eb32c maven settings from : /home/ec2-user/.m2/settings.xml
[ERROR] uniqueVersion == false is not anymore supported in maven 3
[INFO] Deployment in dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots (id=dev.davidsoergel.com.snapshot,uniqueVersion=false)
Deploying the main artifact ml-0.912-SNAPSHOT.jar
Downloading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml
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Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120707.193218-15.jar
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120707.193218-15.jar (195 KB at 291.3 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120707.193218-15.pom
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120707.193218-15.pom (7 KB at 42.0 KB/sec)
Downloading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/maven-metadata.xml
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Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml
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Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/maven-metadata.xml
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/maven-metadata.xml (282 B at 3.2 KB/sec)
Deploying the main artifact ml-0.912-SNAPSHOT-sources.jar
Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120707.193218-15-sources.jar
Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120707.193218-15-sources.jar (187 KB at 1022.4 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml (2 KB at 12.6 KB/sec)
Deploying the main artifact ml-0.912-SNAPSHOT-tests.jar
Uploading: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120707.193218-15-tests.jar
Uploaded: dav:http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/ml-0.912-20120707.193218-15-tests.jar (17 KB at 150.2 KB/sec)
Uploading: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml
Uploaded: http://dev.davidsoergel.com/nexus/content/repositories/snapshots/edu/berkeley/compbio/ml/0.912-SNAPSHOT/maven-metadata.xml (2 KB at 7.2 KB/sec)
[INFO] Deployment done in 2.1 sec
Triggering a new build of jlibsvm #12
Triggering a new build of sequtils #10
Finished: SUCCESS